From: hackbard <hackbard@sage.physik.uni-augsburg.de>
Date: Mon, 18 Aug 2008 12:19:54 +0000 (+0200)
Subject: modified runmd scripts + added pressure debug line (commented) to moldyn
X-Git-Url: https://hackdaworld.org/cgi-bin/gitweb.cgi?a=commitdiff_plain;h=3b28604c5a5c39b3041771891e4eed1999043341;p=physik%2Fposic.git

modified runmd scripts + added pressure debug line (commented) to moldyn
---

diff --git a/moldyn.c b/moldyn.c
index dd8a527..b79dea6 100644
--- a/moldyn.c
+++ b/moldyn.c
@@ -1698,6 +1698,7 @@ printf("\rsched:%d, steps:%d/%d, T:%4.1f/%4.1f P:%4.1f/%4.1f V:%6.1f (%d)",
        sched->count,i,moldyn->total_steps,
        moldyn->t,moldyn->t_avg,
        moldyn->p/BAR,moldyn->p_avg/BAR,
+       //moldyn->p/BAR,(moldyn->p-2.0*moldyn->ekin/(3.0*moldyn->volume))/BAR,
        moldyn->volume,
        (int)(t2.tv_sec-t1.tv_sec));
 
diff --git a/runmd b/runmd
index 5db09fd..d50d9ae 100755
--- a/runmd
+++ b/runmd
@@ -14,7 +14,7 @@ fi
 
 cp -v config $1/config
 
-./mdrun -c ./config -s $1
+time ./mdrun -c ./config -s $1
 
 if [ "$?" == "0" ]; then
 	#./perms
diff --git a/runmd_rx200 b/runmd_rx200
index 9368141..4e4966e 100755
--- a/runmd_rx200
+++ b/runmd_rx200
@@ -23,22 +23,5 @@ cat > run_$rf <<-EOF
 EOF
 
 # submit job
-qsub run_$rf
-
-if [ "$?" == "0" ]; then
-	#./perms
-	if [ "$1" ] ; then
-		# whole simulation cell
-		#./visualize -w 640 -h 480 -d $1
-
-		# center unit cell
-		#./visualize -w 640 -h 480 -d $1 \
-		#            -nll -2.4 -2.4 -2.4 -fur 3.8 3.8 3.8 \
-		#	    -b -2.03 -2.03 -2.03 3.39 3.39 3.39 \
-		#	    -r 0.6 -c 0.5 -11.0 2.5 -B 0.1
-
-		# old rasmol
-		#rasmol -32 -nodisplay < $1/visualize.scr > /dev/null 2>&1
-		#./ppm2avi $1
-	fi
-fi
+qsub -q all.q run_$rf
+