From: hackbard <hackbard>
Date: Wed, 14 Jun 2006 15:47:51 +0000 (+0000)
Subject: -
X-Git-Url: https://hackdaworld.org/cgi-bin/gitweb.cgi?a=commitdiff_plain;h=e86993833978bf71f38e6ca163e3e513e6c27b59;p=lectures%2Flatex.git

-
---

diff --git a/posic/thesis/basics.tex b/posic/thesis/basics.tex
index bc9e8a9..c11a832 100644
--- a/posic/thesis/basics.tex
+++ b/posic/thesis/basics.tex
@@ -2,8 +2,30 @@
 
 \section{Molecular dynamics simulations}
 
+\subsection{Theory of melecular dynamics simulations}
 
-\subsection{Potentials}
+Basically molecular dynamics (MD) simulation is a technique to compute a system of particles, referred to as molecules, that evolve in time.
+The MD method was introduced by Alder and Wainwright in 1957 \cite{alder1,alder2} to study the interactions of hard spheres.
+The basis of the approach are Newton's equations of motion to describe classicaly the many-body system.
+MD simulation is the numerical way of solving the $N$-body problem ($N > 3$) which cannot be solved analytically.
+Quantum mechanical effects are taken into account by an analytical interaction potential between the nuclei.
+
+By MD simulation techniques a complete description of the system in the sense of classical mechanics on the microscopic level is obtained.
+This microscopic information has to be translated to macroscopic observables by means of statistical mechanics.
+
+The basic idea is to integrate Newton's equations numerically.
+A system of $N$ particles of masses $m_i$ ($i=1,\ldots,N$) at positions ${\bf r}_i$ and velocities $\dot{{\bf r}}_i$ is given by
+\begin{equation}
+m_i \frac{d^2}{dt^2} {\bf r}_i = {\bf F}_i \, \textrm{.}
+\end{equation}
+The forces ${\bf F}_i$ are obtained from the potential energy $U(\{{\bf r}\})$:
+\begin{equation}
+{\bf F}_i = - \nabla_{{\bf r}_i} U({\{\bf r}\}) \, \textrm{.}
+\end{equation}
+Given the initial conditions ${\bf r}_i(t_0)$ and $\dot{{\bf r}}_i(t_0)$ the equations can be integrated by a certain integration algorithm.
+The solution of these equations provides the complete information of a system 
+
+\subsection{Interaction potentials}
 
 \subsubsection{The Lennard-Jones potential}
 
@@ -30,7 +52,7 @@ Writing down the derivation of the Lennard-Jones potential in respect to $x_i$ (
 \label{eq:lj-d}
 \end{equation}
 one can easily identify $\sigma$ by the equilibrium distance of the atoms $r_e=\sqrt[6]{2} \sigma$.
-Applying the equilibrium distance into \eqref{eq:lj-p} $\epsilon$ turns out to be half the negative well depth.
+Applying the equilibrium distance into \eqref{eq:lj-p} $\epsilon$ turns out to be the negative well depth.
 The $i$th component of the force $F^j$ on particle $j$ is obtained by
 \begin{equation}
 F_i^j = - \frac{\partial}{\partial x_i} U^{LJ}(r) \, \textrm{.}
diff --git a/posic/thesis/content.tex b/posic/thesis/content.tex
index c886626..90d5122 100644
--- a/posic/thesis/content.tex
+++ b/posic/thesis/content.tex
@@ -1,2 +1,3 @@
+\selectlanguage{english}
 \addcontentsline{toc}{chapter}{Contents}
 \tableofcontents
diff --git a/posic/thesis/literature.tex b/posic/thesis/literature.tex
index e2f4f38..d860d2f 100644
--- a/posic/thesis/literature.tex
+++ b/posic/thesis/literature.tex
@@ -1,5 +1,11 @@
 \addcontentsline{toc}{chapter}{References}
 \begin{thebibliography}{99}
+  \bibitem{alder1}
+    B. J. Alder, T.E. Wainwright.
+    J. Chem. Phys. 27 (1957) 1208.
+  \bibitem{alder2}
+    B. J. Alder, T.E. Wainwright.
+    J. Chem. Phys. 31 (1959) 459.
   \bibitem{example}
     \selectlanguage{german}
     F. Zirkelbach, M. H"aberlen, J. K. N. Lindner, B. Stritzker.
diff --git a/posic/thesis/title.tex b/posic/thesis/title.tex
index 341e50c..e4625a7 100644
--- a/posic/thesis/title.tex
+++ b/posic/thesis/title.tex
@@ -53,7 +53,6 @@
 
 \raisebox{600pt}{ }
 
-\selectlanguage{german}
 \begin{tabular}{ll}
 Erstkorrektor: & Prof. Dr. Bernd Stritzker \\
 Zweitkorrektor: & Prof. Dr. Kai Nordlund \\