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17 years agoadded very simple delta e calc script
hackbard [Thu, 16 Aug 2007 16:27:55 +0000 (18:27 +0200)]
added very simple delta e calc script

17 years agotest without float-store compiler option
hackbard [Thu, 16 Aug 2007 16:27:12 +0000 (18:27 +0200)]
test without float-store compiler option

17 years agomanual boundaries
hackbard [Tue, 14 Aug 2007 13:15:37 +0000 (15:15 +0200)]
manual boundaries

17 years agovisualization stuff
hackbard [Mon, 13 Aug 2007 16:32:45 +0000 (18:32 +0200)]
visualization stuff

17 years agosualization mods + adabtions
hackbard [Thu, 2 Aug 2007 17:07:29 +0000 (19:07 +0200)]
sualization mods + adabtions

17 years agochanges to visualization, not finished by now!
hackbard [Wed, 25 Jul 2007 16:51:51 +0000 (18:51 +0200)]
changes to visualization, not finished by now!

17 years agoadded postproc stuff, sic mods (today i was a lazy ass!)
hackbard [Mon, 23 Jul 2007 15:09:26 +0000 (17:09 +0200)]
added postproc stuff, sic mods (today i was a lazy ass!)

17 years agosmall mods to support site energies and kinetic energies per atom
hackbard [Thu, 19 Jul 2007 16:04:08 +0000 (18:04 +0200)]
small mods to support site energies and kinetic energies per atom

17 years agoprepared another way of carbon injection
hackbard [Tue, 17 Jul 2007 15:24:51 +0000 (17:24 +0200)]
prepared another way of carbon injection

17 years agoruntime schedule adding and injection of c atoms origin
hackbard [Thu, 12 Jul 2007 19:07:20 +0000 (19:07 +0000)]
runtime schedule adding and injection of c atoms

17 years agoruntime schedule adding => hooks must be executed even without following
hackbard [Thu, 12 Jul 2007 16:07:01 +0000 (16:07 +0000)]
runtime schedule adding => hooks must be executed even without following
schedule

17 years ago's/for/while/' <- runtime schedule adding possible now
hackbard [Thu, 12 Jul 2007 15:56:26 +0000 (15:56 +0000)]
's/for/while/' <- runtime schedule adding possible now

17 years agoaverage calc moved, more fscking virial testing
hackbard [Wed, 11 Jul 2007 14:47:58 +0000 (14:47 +0000)]
average calc moved, more fscking virial testing

17 years agosafety checkin, gergo here!
hackbard [Tue, 10 Jul 2007 17:27:01 +0000 (17:27 +0000)]
safety checkin, gergo here!

17 years agosome fixes
hackbard [Fri, 6 Jul 2007 13:59:41 +0000 (13:59 +0000)]
some fixes

17 years agoadded fluctuation calc code
hackbard [Thu, 5 Jul 2007 14:58:10 +0000 (14:58 +0000)]
added fluctuation calc code

17 years agochanged energy fluctuation calc and heat cap calc
hackbard [Tue, 3 Jul 2007 16:04:05 +0000 (16:04 +0000)]
changed energy fluctuation calc and heat cap calc

17 years agostill playing around with heat capacity ...
hackbard [Fri, 29 Jun 2007 12:08:29 +0000 (12:08 +0000)]
still playing around with heat capacity ...

17 years agocorrected random fd close
hackbard [Thu, 28 Jun 2007 06:58:40 +0000 (06:58 +0000)]
corrected random fd close

17 years agopost proc stand alone tool
hackbard [Wed, 27 Jun 2007 22:32:20 +0000 (22:32 +0000)]
post proc stand alone tool

17 years agoadded post proc stuff
hackbard [Wed, 27 Jun 2007 22:24:34 +0000 (22:24 +0000)]
added post proc stuff

17 years agoadded still buggy post processing functions
hackbard [Wed, 27 Jun 2007 07:22:39 +0000 (07:22 +0000)]
added still buggy post processing functions

17 years agoalbe force calc bug fixed, sic mods, mean virial
hackbard [Wed, 30 May 2007 15:43:57 +0000 (15:43 +0000)]
albe force calc bug fixed, sic mods, mean virial

17 years agoadded albe potential (still wrong energy!)
hackbard [Tue, 22 May 2007 15:39:26 +0000 (15:39 +0000)]
added albe potential (still wrong energy!)

17 years agofirst sic tests
hackbard [Fri, 18 May 2007 11:54:07 +0000 (11:54 +0000)]
first sic tests

17 years agoput repulsive part to 3bp/j2 function
hackbard [Thu, 3 May 2007 16:40:02 +0000 (16:40 +0000)]
put repulsive part to 3bp/j2 function

17 years agofixed sign
hackbard [Thu, 3 May 2007 09:43:08 +0000 (09:43 +0000)]
fixed sign

17 years agoadd another way of calculating tersoff + small moldyn mods
hackbard [Fri, 27 Apr 2007 16:39:13 +0000 (16:39 +0000)]
add another way of calculating tersoff + small moldyn mods

17 years agoimproved log/report subsystem, playing around w/ pressure, sic hook
hackbard [Wed, 14 Mar 2007 15:12:05 +0000 (15:12 +0000)]
improved log/report subsystem, playing around w/ pressure, sic hook
testing

17 years agotersoff MAYBE fixed now!
hackbard [Wed, 7 Mar 2007 16:23:21 +0000 (16:23 +0000)]
tersoff MAYBE fixed now!

17 years agoadded potential header files
hackbard [Mon, 5 Mar 2007 10:12:51 +0000 (10:12 +0000)]
added potential header files

17 years agonew structure (skipped 2 inlines) same code!
hackbard [Mon, 5 Mar 2007 10:05:23 +0000 (10:05 +0000)]
new structure (skipped 2 inlines) same code!

17 years agonew src file layout (warning: doesnt compile by now!)
hackbard [Mon, 5 Mar 2007 09:01:53 +0000 (09:01 +0000)]
new src file layout (warning: doesnt compile by now!)

17 years agocreate_lattice fixes, still virial probs ...
hackbard [Wed, 31 Jan 2007 16:35:26 +0000 (16:35 +0000)]
create_lattice fixes, still virial probs ...

17 years agopt scaling tests, though pressure estimation still a mess!
hackbard [Fri, 26 Jan 2007 15:36:19 +0000 (15:36 +0000)]
pt scaling tests, though pressure estimation still a mess!

17 years agonur foo ...
hackbard [Thu, 25 Jan 2007 17:52:03 +0000 (17:52 +0000)]
nur foo ...

17 years agostill pressure (+ fixes with cubic lattce and ho potential ...)
hackbard [Wed, 24 Jan 2007 17:47:05 +0000 (17:47 +0000)]
still pressure (+ fixes with cubic lattce and ho potential ...)

17 years agoadded report system, still messing around with virial pressure
hackbard [Tue, 23 Jan 2007 16:36:18 +0000 (16:36 +0000)]
added report system, still messing around with virial pressure

17 years ago...
hackbard [Wed, 17 Jan 2007 17:33:16 +0000 (17:33 +0000)]
...

17 years agocleaning + set hook function
hackbard [Mon, 15 Jan 2007 16:04:15 +0000 (16:04 +0000)]
cleaning + set hook function

17 years agostill full of bugs ...
hackbard [Fri, 12 Jan 2007 19:35:12 +0000 (19:35 +0000)]
still full of bugs ...

17 years agobugfix dg of dV_ji,jk
hackbard [Thu, 28 Dec 2006 14:15:13 +0000 (14:15 +0000)]
bugfix dg of dV_ji,jk

17 years agofoo
hackbard [Mon, 18 Dec 2006 09:30:22 +0000 (09:30 +0000)]
foo

17 years agotesting foo
hackbard [Sun, 17 Dec 2006 01:29:39 +0000 (01:29 +0000)]
testing foo

17 years agopot hopefully ok, doing timestep tests for 450C now ...
hackbard [Fri, 15 Dec 2006 15:49:06 +0000 (15:49 +0000)]
pot hopefully ok, doing timestep tests for 450C now ...

17 years agoactually just bullshit ... (added unique tag -> maybe symmetry)
hackbard [Fri, 15 Dec 2006 00:41:11 +0000 (00:41 +0000)]
actually just bullshit ... (added unique tag -> maybe symmetry)

17 years agojust foo
hackbard [Thu, 14 Dec 2006 16:52:05 +0000 (16:52 +0000)]
just foo

17 years agosync file added
hackbard [Thu, 14 Dec 2006 13:53:28 +0000 (13:53 +0000)]
sync file added

17 years agosafety ci
hackbard [Thu, 14 Dec 2006 13:52:42 +0000 (13:52 +0000)]
safety ci

17 years agoinit in moldyn now
hackbard [Thu, 14 Dec 2006 00:08:02 +0000 (00:08 +0000)]
init in moldyn now

17 years agonew linked list system, still a pain inthe ...
hackbard [Thu, 14 Dec 2006 00:06:18 +0000 (00:06 +0000)]
new linked list system, still a pain inthe ...

17 years agobasic p control added, virial still needed!
hackbard [Wed, 13 Dec 2006 17:47:42 +0000 (17:47 +0000)]
basic p control added, virial still needed!

17 years agosafety checkin
hackbard [Wed, 13 Dec 2006 00:37:10 +0000 (00:37 +0000)]
safety checkin

17 years agocheck_per_bound, comparing real numbers <- problem! think about it!
hackbard [Tue, 12 Dec 2006 15:58:40 +0000 (15:58 +0000)]
check_per_bound, comparing real numbers <- problem! think about it!

17 years agofixed 2bp, todo: adjust create lattice, then go for 3bp
hackbard [Tue, 12 Dec 2006 14:28:10 +0000 (14:28 +0000)]
fixed 2bp, todo: adjust create lattice, then go for 3bp

17 years agosafety checkin
hackbard [Tue, 12 Dec 2006 11:50:04 +0000 (11:50 +0000)]
safety checkin

17 years agoscaling to fs, angstrom, amu done, probs with velocity scaling!
hackbard [Mon, 11 Dec 2006 22:50:51 +0000 (22:50 +0000)]
scaling to fs, angstrom, amu done, probs with velocity scaling!

17 years agocompiler probs ?!? bc check ... (working with gcc-3.4)
hackbard [Mon, 11 Dec 2006 16:07:58 +0000 (16:07 +0000)]
compiler probs ?!? bc check ... (working with gcc-3.4)

17 years agobc check probs
hackbard [Mon, 11 Dec 2006 16:03:33 +0000 (16:03 +0000)]
bc check probs

17 years agosecurity checkin
hackbard [Mon, 11 Dec 2006 10:19:02 +0000 (10:19 +0000)]
security checkin

17 years agomods to corect 3bp derivative, still segfaulting ...
hackbard [Sun, 10 Dec 2006 22:44:50 +0000 (22:44 +0000)]
mods to corect 3bp derivative, still segfaulting ...

17 years agonearly finished 3bp tersoff routine (2bp post needs to be done after
hackbard [Sun, 10 Dec 2006 04:06:24 +0000 (04:06 +0000)]
nearly finished 3bp tersoff routine (2bp post needs to be done after
that!)

17 years agodist vectors changed, lj and ho forces adjusted, tersoff needs redesign
hackbard [Fri, 8 Dec 2006 00:21:15 +0000 (00:21 +0000)]
dist vectors changed, lj and ho forces adjusted, tersoff needs redesign
anyways ... *sigh*

17 years agomore tersoff changes, still a mess!
hackbard [Thu, 7 Dec 2006 02:20:27 +0000 (02:20 +0000)]
more tersoff changes, still a mess!

17 years agoneed sleep, continue debugging soon!
hackbard [Wed, 6 Dec 2006 01:51:41 +0000 (01:51 +0000)]
need sleep, continue debugging soon!

17 years agofunc2b is now again real func2b ... still -> nan! :/
hackbard [Tue, 5 Dec 2006 16:44:36 +0000 (16:44 +0000)]
func2b is now again real func2b ... still -> nan! :/

17 years agosome bugfixes ... com'on
hackbard [Tue, 5 Dec 2006 15:49:56 +0000 (15:49 +0000)]
some bugfixes ... com'on

17 years agomoved functions to header file and made them static inlines
hackbard [Tue, 5 Dec 2006 15:48:45 +0000 (15:48 +0000)]
moved functions to header file and made them static inlines

17 years agono segfaulst anymore BUT take care, definetly calculating bullshit
hackbard [Mon, 4 Dec 2006 22:05:23 +0000 (22:05 +0000)]
no segfaulst anymore BUT take care, definetly calculating bullshit

17 years agoadded 2bp post function .. this is getting sick!
hackbard [Mon, 4 Dec 2006 14:55:02 +0000 (14:55 +0000)]
added 2bp post function .. this is getting sick!

17 years agotests ...
hackbard [Sun, 3 Dec 2006 01:54:29 +0000 (01:54 +0000)]
tests ...

17 years agoready for tersoff 3bp debugging
hackbard [Fri, 1 Dec 2006 14:59:08 +0000 (14:59 +0000)]
ready for tersoff 3bp debugging

17 years agovel scaling issues, tersoff still segfaulting!
hackbard [Thu, 30 Nov 2006 23:54:37 +0000 (23:54 +0000)]
vel scaling issues, tersoff still segfaulting!

17 years agotesting
hackbard [Thu, 30 Nov 2006 20:52:12 +0000 (20:52 +0000)]
testing

17 years agoneighbourk fix
hackbard [Thu, 30 Nov 2006 18:53:28 +0000 (18:53 +0000)]
neighbourk fix

17 years agointo the tersoff potential
hackbard [Thu, 30 Nov 2006 15:55:32 +0000 (15:55 +0000)]
into the tersoff potential

17 years agovel scaling fixed/changed
hackbard [Thu, 30 Nov 2006 10:46:08 +0000 (10:46 +0000)]
vel scaling fixed/changed

17 years agotesting
hackbard [Thu, 30 Nov 2006 08:43:32 +0000 (08:43 +0000)]
testing

17 years agofixed create_lattice routine
hackbard [Wed, 29 Nov 2006 22:00:26 +0000 (22:00 +0000)]
fixed create_lattice routine

17 years agomore foo
hackbard [Wed, 29 Nov 2006 19:10:55 +0000 (19:10 +0000)]
more foo

17 years agomore updates -> testing
hackbard [Wed, 29 Nov 2006 16:25:08 +0000 (16:25 +0000)]
more updates -> testing

17 years agosecurity ci
hackbard [Wed, 29 Nov 2006 15:20:19 +0000 (15:20 +0000)]
security ci

17 years agotest
hackbard [Wed, 29 Nov 2006 13:23:18 +0000 (13:23 +0000)]
test

18 years agowell, no more segfaults -> now its getting hard to debug ...
hackbard [Tue, 28 Nov 2006 15:37:00 +0000 (15:37 +0000)]
well, no more segfaults -> now its getting hard to debug ...

18 years agomoldyn compiles now .... now go to example sic code!
hackbard [Tue, 28 Nov 2006 13:34:08 +0000 (13:34 +0000)]
moldyn compiles now .... now go to example sic code!

18 years agostill: moldyn.c:1236: error: parse error at end of input - :/
hackbard [Tue, 28 Nov 2006 13:17:59 +0000 (13:17 +0000)]
still: moldyn.c:1236: error: parse error at end of input     - :/

18 years agoadded sic example code
hackbard [Tue, 28 Nov 2006 10:36:04 +0000 (10:36 +0000)]
added sic example code

18 years agomore updates, now get the code running .... :/
hackbard [Tue, 28 Nov 2006 10:35:42 +0000 (10:35 +0000)]
more updates, now get the code running .... :/

18 years agomore changes ...
hackbard [Sun, 26 Nov 2006 23:05:00 +0000 (23:05 +0000)]
more changes ...

18 years agofoo
hackbard [Sat, 25 Nov 2006 23:09:34 +0000 (23:09 +0000)]
foo

18 years agomore changes ...
hackbard [Fri, 24 Nov 2006 13:43:15 +0000 (13:43 +0000)]
more changes ...

18 years agofinished basic tersoff stuff, now start fixing ... !
hackbard [Fri, 24 Nov 2006 12:11:43 +0000 (12:11 +0000)]
finished basic tersoff stuff, now start fixing ... !

18 years agonearly finished tersoff potential ...
hackbard [Thu, 23 Nov 2006 15:20:46 +0000 (15:20 +0000)]
nearly finished tersoff potential ...

18 years agonearly finished tersoff 2 body part and new api
hackbard [Wed, 22 Nov 2006 15:23:42 +0000 (15:23 +0000)]
nearly finished tersoff 2 body part and new api

18 years agosecurity ci
hackbard [Wed, 22 Nov 2006 10:40:07 +0000 (10:40 +0000)]
security ci

18 years agomore updates
hackbard [Tue, 21 Nov 2006 17:35:39 +0000 (17:35 +0000)]
more updates

18 years agobegan rewrite ...
hackbard [Fri, 17 Nov 2006 10:19:50 +0000 (10:19 +0000)]
began rewrite ...

18 years agomore ..
hackbard [Thu, 17 Aug 2006 15:41:43 +0000 (15:41 +0000)]
more ..

18 years agolittle more tersoff ...
hackbard [Wed, 16 Aug 2006 15:22:32 +0000 (15:22 +0000)]
little more tersoff ...

18 years agosome changes
hackbard [Wed, 16 Aug 2006 14:45:22 +0000 (14:45 +0000)]
some changes