printf("-x <value> \t # x cells (default %d)\n",X);
printf("-y <value> \t # x cells (default %d)\n",Y);
printf("-z <value> \t # x cells (default %d)\n",Z);
+ /*
printf("-X <value> \t display x (default %d)\n",X/2-1);
printf("-Y <value> \t display y (default %d)\n",Y/2-1);
printf("-Z <value> \t display z (default %d)\n",Z/2-1);
+ */
printf("-s <value> \t steps (default %d)\n",STEPS);
printf("-d <value> \t refresh display (default %d)\n",REFRESH);
printf("-r <value> \t amorphous influence range (default %d)\n",RANGE);
printf("-p <value> \t pressure offset (default %f)\n",B_AP);
printf("-A <value> \t slope of linear c distribution (default %f)\n",A_CD);
printf("-B <value> \t linear c distribution offset (default %f)\n",B_CD);
+ /*
printf("-C <value> \t initial c concentration (default %d)\n",CC);
+ */
+ printf("-D <value> \t diffusion rate from cryst to amorph cells (default %f)\n",D_R);
puts("-L <file> \t load from file");
puts("-S <file> \t save to file");
puts("-R <file> \t read from random file");
return 1;
}
-int process_cell(3d_lattice *3d_l,u32 x,u32 y,u32 z,int r,double a,double b,int *t_c)
+int process_cell(d3_lattice *d3_l,u32 x,u32 y,u32 z,int r,double a,double b,int *t_c)
{
unsigned char *thiz;
int *conc;
int i,j;
double p;
- thiz=3d_l->status+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
- conc=3d_l->extra+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
+ thiz=d3_l->status+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
+ conc=d3_l->extra+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
p=b*URAND_MAX;
for(i=-r;i<=r;i++)
{
}
}
}
- p*=*conc;
if(!(*thiz&AMORPH))
{
- if(rand_get(URAND_MAX)<=p)
+ if(get_rand(URAND_MAX)<=p)
{
MAKE_AMORPH(thiz);
- *t_c=*t_c+1-*conc;
- } else *t_c+=1;
+ // *t_c=*t_c+1-*conc;
+ } // else *t_c+=1;
} else
{
/* assume 1-p probability */
- if(rand_get(URAND_MAX)>p)
+ if(get_rand(URAND_MAX)>p)
{
MAKE_CRYST(thiz);
- *t_c=*t_c+1+*conc;
- } else *t_c+=1;
+ // *t_c=*t_c+1+*conc;
+ } // else *t_c+=1;
}
+
+ *t_c+=1;
return 1;
}
-int distrib_c(3d_lattice *3d_l,int t_c,double a,double b)
+int distrib_c(d3_lattice *d3_l,double d_r,double a,double b)
{
- int i,j,k,total,area,sum;
+ u32 x,y,z;
+ int i,j,k,c;
+ int offset,off;
+ int carry;
+
+ /* put one c ion somewhere in the lattice */
+ x=get_rand(d3_l->max_x);
+ y=get_rand(d3_l->max_y);
+ z=get_rand_lgp(d3_l->max_z,a,b);
+ *(d3_l->extra+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y)+=1;
+
+ /* diffusion in layer */
+ for(i=0;i<d3_l->max_x;i++)
+ {
+ for(j=0;j<d3_l->max_y;j++)
+ {
+ for(k=0;k<d3_l->max_z;k++)
+ {
+ offset=i+j*d3_l->max_x+k*d3_l->max_x*d3_l->max_y;
+ /* case amorph */
+ if(*(d3_l->status+offset)&AMORPH)
+ {
+ /* look at neighbours and move c ions */
+ for(c=-1;c<=1;c++)
+ {
+ if(c!=0)
+ {
+ off=((i+d3_l->max_x+c)%d3_l->max_x)+j*d3_l->max_x+k*d3_l->max_x*d3_l->max_y;
+ /* case neighbour not amorph */
+ if(!(*(d3_l->status+off)&AMORPH)) carry=(int)(d_r*(*(d3_l->extra+off)));
+ /* case neighbour amorph */
+ else carry=(*(d3_l->extra+off)-*(d3_l->extra+offset))/2;
+ if(carry!=0)
+ {
+ *(d3_l->extra+offset)+=carry;
+ *(d3_l->extra+off)-=carry;
+ }
+ }
+ }
+ for(c=-1;c<=1;c++)
+ {
+ if(c!=0)
+ {
+ off=i+((j+c+d3_l->max_y)%d3_l->max_y)*d3_l->max_x+k*d3_l->max_x*d3_l->max_y;
+ /* case neighbour not amorph */
+ if(!(*(d3_l->status+off)&AMORPH)) carry=(int)(d_r*(*(d3_l->extra+off)));
+ /* case neighbour amorph */
+ else carry=(*(d3_l->extra+off)-*(d3_l->extra+offset))/2;
+ if(carry!=0)
+ {
+ *(d3_l->extra+offset)+=carry;
+ *(d3_l->extra+off)-=carry;
+ }
+ }
+ }
+ } else
+ /* case not amorph */
+ {
+ /* look at neighbours and move c ions */
+ for(c=-1;c<=1;c++)
+ {
+ if(c!=0)
+ {
+ off=i+((j+c+d3_l->max_y)%d3_l->max_y)*d3_l->max_x+k*d3_l->max_x*d3_l->max_y;
+ /* case neighbour not amorph */
+ if(!(*(d3_l->status+off)&AMORPH))
+ {
+ carry=(*(d3_l->extra+off)-*(d3_l->extra+offset))/2;
+ if(carry!=0)
+ {
+ *(d3_l->extra+offset)+=carry;
+ *(d3_l->extra+off)-=carry;
+ }
+ }
+ }
+ }
+ }
+ } /* for z */
+ } /* for y */
+ } /* for x */
+
+ return 1;
+}
+
+int distrib_c_old(d3_lattice *d3_l,int t_c,double a,double b)
+{
+ int i,j,k,total,area;
+ double sum;
int temp,left;
int *area_h;
u32 x,y,z;
area_h=(int *)malloc(d3_l->max_z*sizeof(int));
total=0;
- sum=0;
+ sum=b*d3_l->max_z+a*d3_l->max_z*(d3_l->max_z+1)/2;
for(i=0;i<d3_l->max_z;i++)
{
area_h[i]=0;
{
if(!(*(d3_l->status+(i*area)+j)&AMORPH))
{
- sum+=(i+1)*a+b;
area_h[i]+=1;
}
}
- }
- for(i=0;i<d3_l->max_z;i++)
- {
- temp=((i+1)*a+b)*t_c/(sum+area_h[i]);
- if(temp>1)
+ temp=(int)((i+1)*a+b)*t_c/(sum*area_h[i]);
+ for(j=0;j<area;j++)
{
- for(j=0;j<area;j++)
+ if(!(*(d3_l->status+(i*area)+j)&AMORPH))
{
- if(!(*(d3_l->status+(i*area)+j)&AMORPH))
- {
- *(d3_l->extra+(i*area)+j)=temp;
- total+=temp;
- }
+ *(d3_l->extra+(i*area)+j)=temp;
+ total+=temp;
}
}
- left=(((i+1)*a+b)*t_c/sum)%area_h[i];
+ left=(int)(((i+1)*a+b)*t_c/sum)%area_h[i];
while(left)
{
- x=get_rand(d3_l->max_x);
- y=get_rand(d3_l->max_y);
- if(!(*(d3_l->status+(i*area)+x+y*d3_l->max_x)&AMORPH))
- {
- *(d3_l->extra+(i*area)+x+y*d3_l->max_x)+=1;
- total+=1;
- left-=1;
+ x=get_rand(d3_l->max_x);
+ y=get_rand(d3_l->max_y);
+ if(!(*(d3_l->status+(i*area)+x+y*d3_l->max_x)&AMORPH))
+ {
+ *(d3_l->extra+(i*area)+x+y*d3_l->max_x)+=1;
+ total+=1;
+ left-=1;
+ }
}
}
left=t_c-total;
x=get_rand(d3_l->max_x);
y=get_rand(d3_l->max_y);
z=get_rand_lgp(d3_l->max_z,a,b);
- if(!(*(d3_l->status+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y)&AMORPH))
+ if(!(*(d3_l->status+x+y*d3_l->max_x+z*area)&AMORPH))
{
- *(d3_l->extra+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y)+=1;
+ *(d3_l->extra+x+y*d3_l->max_x+z*area)+=1;
left-=1;
- total+=1;
}
}
+ free(area_h);
return 1;
}
-int save_to_file(char *sf,3d_lattice *3d_l)
+int save_to_file(char *sf,d3_lattice *d3_l,info *my_inf)
{
int sf_fd,c;
puts("cannot open save file");
return -1;
}
- if(write(sf_fd,3d_l,sizeof(3d_lattice))<sizeof(3d_lattice))
+ if(write(sf_fd,d3_l,sizeof(d3_lattice))<sizeof(d3_lattice))
{
- puts("failed saving 3d lattice struct");
+ puts("failed saving d3 lattice struct");
return -1;
}
+ if(write(sf_fd,my_inf,sizeof(info))<sizeof(info))
+ {
+ puts("failed saving info struct");
+ return-1;
+ }
c=d3_l->max_x*d3_l->max_y*d3_l->max_z;
- if(write(sf_fd,3d_l->status,c*sizeof(unsigned char)<c*sizeof(unsigned char))
+ if(write(sf_fd,d3_l->status,c*sizeof(unsigned char))<c*sizeof(unsigned char))
{
- puts("failed saving status of 3d lattice sites");
+ puts("failed saving status of d3 lattice sites");
return -1;
}
- if(write(sf_fd,3d_l->extra,c*sizeof(int)<c*sizeof(int))
+ if(write(sf_fd,d3_l->extra,c*sizeof(int))<c*sizeof(int))
{
puts("failed saving sites concentration");
return -1;
return 1;
}
-int load_from_file(char *lf,3d_lattice *3d_l)
+int load_from_file(char *lf,d3_lattice *d3_l,info *my_inf)
{
int lf_fd,c;
puts("cannot open load file");
return -1;
}
- if(read(lf_fd,3d_l,sizeof(3d_lattice))<sizeof(3d_lattice))
+ if(read(lf_fd,d3_l,sizeof(d3_lattice))<sizeof(d3_lattice))
{
puts("failed reading d3 lattice struct");
return -1;
}
+ if(read(lf_fd,my_inf,sizeof(info))<sizeof(info))
+ {
+ puts("failed reading info struct");
+ return-1;
+ }
c=d3_l->max_x*d3_l->max_y*d3_l->max_z;
if((d3_l->status=(unsigned char*)malloc(c*sizeof(unsigned char)))==NULL)
{
puts("cannot allocate concentration buffer");
return -1;
}
- if(read(lf_fd,3d_l->status,c*sizeof(unsigned char))<c*sizeof(unsigned char))
+ if(read(lf_fd,d3_l->status,c*sizeof(unsigned char))<c*sizeof(unsigned char))
{
- puts("failed reading status of 3d lattice sites");
+ puts("failed reading status of d3 lattice sites");
return -1;
}
- if(read(lf_fd,3d_l->extra,c*sizeof(int))<c*sizeof(int))
+ if(read(lf_fd,d3_l->extra,c*sizeof(int))<c*sizeof(int))
{
puts("failed reading sites concentration");
return -1;
{
u32 max_x,max_y,max_z,x,y,z,x_c,y_c,z_c;
int i,quit,escape,nowait;
- double a_el,b_el,a_cd,b_cd,a_ap,b_ap;
- int cc,steps,range,refresh;
+ int refresh;
char s_file[MAX_CHARS];
char l_file[MAX_CHARS];
char r_file[MAX_CHARS];
- x_txt[MAX_TXT];
- y_txt[MAX_TXT];
- z_txt[MAX_TXT];
- status_txt[MAX_TXT];
- conc_txt[MAX_TXT];
- steps_txt[MAX_TXT];
- cc_txt[MAX_TXT];
- **arg_v;
+ char x_txt[MAX_TXT];
+ char y_txt[MAX_TXT];
+ char z_txt[MAX_TXT];
+ char status_txt[MAX_TXT];
+ char conc_txt[MAX_TXT];
+ char steps_txt[MAX_TXT];
+ char cc_txt[MAX_TXT];
+ char a_txt[MAX_TXT];
+ char s_txt[MAX_TXT];
+ char ap_txt[MAX_TXT];
+ char el_txt[MAX_TXT];
+ char cd_txt[MAX_TXT];
+ char r_txt[MAX_TXT];
+ char ap2_txt[MAX_TXT];
+ char cd2_txt[MAX_TXT];
+ char el2_txt[MAX_TXT];
+ char dr_txt[MAX_TXT];
+ char *arg_v[MAX_ARGV];
d3_lattice d3_l;
+ info my_info;
max_x=X;
max_y=Y;
max_z=Z;
- x=X/2-1;
- y=Y/2-1;
- z=Z/2-1;
- steps=STEPS;
- range=RANGE;
+ my_info.steps=STEPS;
+ my_info.range=RANGE;
refresh=REFRESH;
- a_el=A_EL;
- b_el=B_EL;
- a_cd=A_CD;
- b_cd=B_CD;
- a_ap=A_AP;
- b_ap=B_AP;
- cc=CC;
+ my_info.a_el=A_EL;
+ my_info.b_el=B_EL;
+ my_info.a_cd=A_CD;
+ my_info.b_cd=B_CD;
+ my_info.a_ap=A_AP;
+ my_info.b_ap=B_AP;
+ my_info.cc=CC;
+ my_info.d_r=D_R;
nowait=0;
+ quit=0;
+ escape=0;
strcpy(s_file,"");
strcpy(l_file,"");
strcpy(r_file,"");
- for(i=1,i<argc,i++)
+ for(i=1;i<argc;i++)
{
if(argv[i][0]=='-')
{
nowait=1;
break;
case 'a':
- a_el=atof(argv[++i]);
+ my_info.a_el=atof(argv[++i]);
break;
case 'b':
- b_el=atof(argv[++i]);
+ my_info.b_el=atof(argv[++i]);
break;
case 'x':
max_x=atoi(argv[++i]);
case 'z':
max_z=atoi(argv[++i]);
break;
+ /*
case 'X':
x=atoi(argv[++i]);
break;
case 'Z':
z=atoi(argv[++i]);
break;
+ */
case 's':
- steps=atoi(argv[++i]);
+ my_info.steps=atoi(argv[++i]);
break;
case 'd':
refresh=atoi(argv[++i]);
break;
case 'r':
- range=atoi(argv[++i]);
+ my_info.range=atoi(argv[++i]);
break;
case 'f':
- a_ap=atof(argv[++i]);
+ my_info.a_ap=atof(argv[++i]);
break;
case 'p':
- b_ap=atof(argv[++i]);
+ my_info.b_ap=atof(argv[++i]);
break;
case 'A':
- a_cd=atof(argv[++i]);
+ my_info.a_cd=atof(argv[++i]);
break;
case 'B':
- b_cd=atof(argv[++i]);
+ my_info.b_cd=atof(argv[++i]);
break;
+ /*
case 'C':
- cc=atoi(argv[++i]);
+ my_info.cc=atoi(argv[++i]);
+ break;
+ */
+ case 'D':
+ my_info.d_r=atof(argv[++i]);
break;
case 'L':
strcpy(l_file,argv[++i]);
} else usage();
}
+ x=max_x/2-1;
+ y=max_y/2-1;
+ z=max_z/2-1;
+
+
+
if(!strcmp(r_file,"")) rand_init(NULL);
else rand_init(r_file);
{
i=max_x*max_y*max_z;
d3_lattice_init(&argc,argv,&d3_l,max_x,max_y,max_z);
- if((d3_l->status=(unsigned char *)malloc(i*sizeof(unsigned char)))==NULL)
+ if((d3_l.status=(unsigned char *)malloc(i*sizeof(unsigned char)))==NULL)
{
puts("failed allocating status buffer");
return -1;
}
- memset(d3_l->status,0,i*sizeof(unsigned char));
- if((d3_l->extra=(int *)malloc(i*sizeof(int)))==NULL)
+ memset(d3_l.status,0,i*sizeof(unsigned char));
+ if((d3_l.extra=(int *)malloc(i*sizeof(int)))==NULL)
{
puts("failed allocating concentration buffer");
return -1;
}
- memset(d3_l->extra,0,i*sizeof(int));
+ memset(d3_l.extra,0,i*sizeof(int));
} else
{
- load_from_file(l_file,&d3_l);
- d3_lattice_init(&argc,argv,&d3_l,d3_l->max_x,d3_l->max_y,d3_l->max_z);
+ load_from_file(l_file,&d3_l,&my_info);
+ d3_lattice_init(&argc,argv,&d3_l,d3_l.max_x,d3_l.max_y,d3_l.max_z);
}
d3_event_init(&d3_l);
+ strcpy(a_txt,"args:");
+ sprintf(s_txt,"steps: %d",my_info.steps);
+ sprintf(r_txt,"pressure range: %d",my_info.range);
+ sprintf(ap_txt,"pressure faktor: %.2f",my_info.a_ap);
+ sprintf(ap2_txt,"pressure offset: %.2f",my_info.b_ap);
+ sprintf(el_txt,"energy loss slope: %.2f",my_info.a_el);
+ sprintf(el2_txt,"energy loss offset: %.2f",my_info.b_el);
+ sprintf(cd_txt,"c distrib slope: %.2f",my_info.a_cd);
+ sprintf(cd2_txt,"c distrib offset: %.2f",my_info.b_cd);
+ sprintf(dr_txt,"diffusion rate: %.2f",my_info.d_r);
+ arg_v[1]=x_txt;
+ arg_v[2]=y_txt;
+ arg_v[3]=z_txt;
+ arg_v[4]=NULL;
+ arg_v[5]=status_txt;
+ arg_v[6]=conc_txt;
+ arg_v[7]=NULL;
+ arg_v[8]=NULL;
+ arg_v[9]=NULL;
+ arg_v[10]=steps_txt;;
+ arg_v[11]=cc_txt;
+ arg_v[12]=NULL;
+ arg_v[13]=NULL;
+ arg_v[14]=a_txt;
+ arg_v[15]=NULL;
+ arg_v[16]=s_txt;
+ arg_v[17]=r_txt;
+ arg_v[18]=ap_txt;
+ arg_v[19]=ap2_txt;
+ arg_v[20]=el_txt;
+ arg_v[21]=el2_txt;
+ arg_v[22]=cd_txt;
+ arg_v[23]=cd2_txt;
+ arg_v[24]=dr_txt;
+
if(!strcmp(l_file,""))
{
- while((i<steps) && (quit==0) && (escape==0))
+ i=0;
+ while((i<my_info.steps) && (quit==0) && (escape==0))
{
- x_c=rand_get(d3_l->max_x);
- y_c=rand_get(d3_l->max_y);
- z_c=rand_get_lgp(d3_l->max_z,a_el,b_el);
- distrib_c(&3d_l,cc,a_cd,b_cd);
- process_cell(&3d_l,x_c,y_c,z_c,range,a_ap,b_ap,&cc);
+ x_c=get_rand(d3_l.max_x);
+ y_c=get_rand(d3_l.max_y);
+ z_c=get_rand_lgp(d3_l.max_z,my_info.a_el,my_info.b_el);
+ distrib_c(&d3_l,my_info.d_r,my_info.a_cd,my_info.b_cd);
+ process_cell(&d3_l,x_c,y_c,z_c,my_info.range,my_info.a_ap,my_info.b_ap,&(my_info.cc));
if(i%refresh==0)
{
- sprintf(x_txt,"x: %d",x);
- sprintf(y_txt,"y: %d",y);
- sprintf(z_txt,"z: %d",z);
- sprintf(status_txt,"status: %c",(*(d3_l->status+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y)&AMORPH)?'a':'c');
- sprintf(conc_txt,"conc: %d",*(d3_l->extra+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y));
+ sprintf(x_txt,"x: %d",x+1);
+ sprintf(y_txt,"y: %d",y+1);
+ sprintf(z_txt,"z: %d",z+1);
+ sprintf(status_txt,"status: %c",(*(d3_l.status+x+y*d3_l.max_x+z*d3_l.max_x*d3_l.max_y)&AMORPH)?'a':'c');
+ sprintf(conc_txt,"conc: %d",*(d3_l.extra+x+y*d3_l.max_x+z*d3_l.max_x*d3_l.max_y));
sprintf(steps_txt,"step: %d",i);
- sprintf(cc_txt,"total c: %d",cc);
- arg_v[1]=x_txt;
- arg_v[2]=y_txt;
- arg_v[3]=z_txt;
- arg_v[4]=NULL;
- arg_v[5]=status_txt;
- arg_v[6]=conc_txt;
- arg_v[7]=NULL;
- arg_v[8]=NULL;
- arg_v[9]=steps_txt;
- arg_v[10]=cc_txt;
- d3_lattice_draw(&d3_l,x,y,z,10,arg_v);
- scan_event(&d3_l,&x,&y,&z,&quit,&escape);
+ sprintf(cc_txt,"total c: %d",my_info.cc);
+ d3_lattice_draw(&d3_l,x,y,z,24,arg_v);
+ // scan_event(&d3_l,&x,&y,&z,&quit,&escape);
}
- ++i;
+ i++;
}
}
+ if(strcmp(s_file,"")) save_to_file(s_file,&d3_l,&my_info);
+
while((quit==0) && (escape==0) && (nowait==0))
{
- sprintf(x_txt,"x: %d",x);
- sprintf(y_txt,"y: %d",y);
- sprintf(z_txt,"z: %d",z);
- sprintf(status_txt,"status: %c",(*(d3_l->status+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y)&AMORPH)?'a':'c');
- sprintf(conc_txt,"conc: %d",*(d3_l->extra+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y));
+ sprintf(x_txt,"x: %d",x+1);
+ sprintf(y_txt,"y: %d",y+1);
+ sprintf(z_txt,"z: %d",z+1);
+ sprintf(status_txt,"status: %c",(*(d3_l.status+x+y*d3_l.max_x+z*d3_l.max_x*d3_l.max_y)&AMORPH)?'a':'c');
+ sprintf(conc_txt,"conc: %d",*(d3_l.extra+x+y*d3_l.max_x+z*d3_l.max_x*d3_l.max_y));
strcpy(steps_txt,"step: end!");
- sprintf(cc_txt,"total c: %d",cc);
- arg_v[1]=x_txt;
- arg_v[2]=y_txt;
- arg_v[3]=z_txt;
- arg_v[4]=NULL;
- arg_v[5]=status_txt;
- arg_v[6]=conc_txt;
- arg_v[7]=NULL;
- arg_v[8]=NULL;
- arg_v[9]=steps_txt;
- arg_v[10]=cc_txt;
- d3_lattice_draw(&d3_l,x,y,z,10,arg_v);
+ sprintf(cc_txt,"total c: %d",my_info.cc);
+ d3_lattice_draw(&d3_l,x,y,z,24,arg_v);
scan_event(&d3_l,&x,&y,&z,&quit,&escape);
}
+ d3_lattice_release(&d3_l);
+
return 1;
}