X-Git-Url: https://hackdaworld.org/gitweb/?a=blobdiff_plain;f=mdrun.h;h=90300726b409d0ce017db75d15fd5860b099375a;hb=55cd4d049604f2cf1d0fff095e6bcd13ec25780f;hp=83a8196d879f09f9a3f164ee923435466427dc47;hpb=2dddad627c54f294c4c5b5d736178c3ef3288159;p=physik%2Fposic.git

diff --git a/mdrun.h b/mdrun.h
index 83a8196..9030072 100644
--- a/mdrun.h
+++ b/mdrun.h
@@ -18,9 +18,6 @@
 /* main molecular dynamics api */
 #include "moldyn.h"
 
-/* elements */
-#include "pse.h"
-
 /* list api */
 #include "list/list.h"
 
@@ -44,15 +41,21 @@ typedef struct s_stage {
 	u8 executed;
 } t_stage;
 
+#define STAGE_DISPLACE_ATOM			0x00
 #define STAGE_INSERT_ATOMS			0x01
-#define STAGE_CONTINUE				0x02
-#define STAGE_ANNEAL				0x03
-#define STAGE_CHAATTR				0x04
-#define STAGE_CHSATTR				0x05
+#define STAGE_INSERT_MIXED_ATOMS		0x02
+#define STAGE_CONTINUE				0x03
+#define STAGE_ANNEAL				0x04
+#define STAGE_CHAATTR				0x05
+#define STAGE_CHSATTR				0x06
+#define STAGE_SET_TEMP				0x07
+#define STAGE_SET_TIMESTEP			0x08
 
 typedef struct s_mdrun {
 	char cfile[128];			// config file
 
+	char continue_file[128];		// moldyn save file to continue
+
 	u8 intalgo;				// integration algorithm
 	double timestep;			// timestep
 
@@ -102,6 +105,11 @@ typedef struct s_mdrun {
 #define SATTR_TRELAX				0x02
 #define SATTR_AVGRST				0x04
 
+typedef struct s_displace_atom_params {
+	int nr;
+	double dx,dy,dz;
+} t_displace_atom_params;
+
 typedef struct s_insert_atoms_params {
 	u8 type;
 	double x0,y0,z0,x1,y1,z1;
@@ -114,8 +122,22 @@ typedef struct s_insert_atoms_params {
 	u8 attr;
 } t_insert_atoms_params;
 
+typedef struct s_insert_mixed_atoms_params {
+	int element1;
+	int element2;
+	int amount1;
+	int amount2;
+	u8 brand1;
+	u8 brand2;
+	u8 attr1;
+	u8 attr2;
+	double crmin;
+	double crmax;
+} t_insert_mixed_atoms_params;
+
 #define INS_TOTAL				0x01
 #define INS_REGION				0x02
+#define INS_POS					0x03
 
 typedef struct s_continue_params {
 	int runs;
@@ -156,6 +178,18 @@ typedef struct s_chsattr_params {
 #define CHSATTR_AVGRST				0x10
 #define CHSATTR_RSTEPS				0x20
 
+typedef struct s_set_temp_params {
+	u8 type;
+	double val;
+} t_set_temp_params;
+
+#define SET_TEMP_CURRENT			0x01
+#define SET_TEMP_VALUE				0x02
+
+typedef struct s_set_timestep_params {
+	double tau;
+} t_set_timestep_params;
+
 /*
  * function prototypes
  */