X-Git-Url: https://hackdaworld.org/gitweb/?a=blobdiff_plain;f=moldyn.c;h=c7243e04ef82a9d7004059429ce73e00999b52a0;hb=d3d65b8212c02f787a16cb312bf08b7712e89550;hp=57f76c433ae7d431fc860dc51ddc21b6982a6d29;hpb=06912ca45b46de412570a4bd5b5484aa9e8d6e6b;p=physik%2Fposic.git

diff --git a/moldyn.c b/moldyn.c
index 57f76c4..c7243e0 100644
--- a/moldyn.c
+++ b/moldyn.c
@@ -56,10 +56,6 @@ int moldyn_usage(char **argv) {
 int moldyn_parse_argv(t_moldyn *moldyn,int argc,char **argv) {
 
 	int i;
-	t_ho_params hop;
-	t_lj_params ljp;
-	t_tersoff_params tp;
-	double s,e;
 
 	memset(moldyn,0,sizeof(t_moldyn));
 
@@ -68,7 +64,6 @@ int moldyn_parse_argv(t_moldyn *moldyn,int argc,char **argv) {
 	moldyn->tau=MOLDYN_TAU;
 	moldyn->time_steps=MOLDYN_RUNS;
 	moldyn->integrate=velocity_verlet;
-	moldyn->potential_force_function=lennard_jones;
 
 	/* parse argv */
 	for(i=1;i<argc;i++) {
@@ -232,7 +227,7 @@ int moldyn_shutdown(t_moldyn *moldyn) {
 	return 0;
 }
 
-int create_lattice(unsigned char type,int element,double mass,double lc,
+int create_lattice(u8 type,int element,double mass,double lc,
                    int a,int b,int c,t_atom **atom) {
 
 	int count;
@@ -487,7 +482,7 @@ int link_cell_neighbour_index(t_moldyn *moldyn,int i,int j,int k,t_list *cell) {
 	int ci,cj,ck;
 	int nx,ny,nz;
 	int x,y,z;
-	unsigned char bx,by,bz;
+	u8 bx,by,bz;
 
 	lc=&(moldyn->lc);
 	nx=lc->nx;
@@ -552,6 +547,18 @@ int link_cell_shutdown(t_moldyn *moldyn) {
 	return 0;
 }
 
+int moldyn_add_schedule(t_moldyn *moldyn,) {
+
+
+	return 0;
+}
+
+int moldyn_set_schedule_hook(t_moldyn *moldyn,void *hook,void *hook_params) {
+
+	
+	return 0;
+}
+
 /*
  *
  * 'integration of newtons equation' - algorithms
@@ -562,7 +569,7 @@ int link_cell_shutdown(t_moldyn *moldyn) {
 
 int moldyn_integrate(t_moldyn *moldyn) {
 
-	int i;
+	int i,sched;
 	unsigned int e,m,s,d,v;
 	t_3dvec p;
 
@@ -591,6 +598,15 @@ int moldyn_integrate(t_moldyn *moldyn) {
 	/* calculate initial forces */
 	moldyn->potential_force_function(moldyn);
 
+	for(sched=0;sched<moldyn->schedule.content_count;sched++) {
+
+		/* setting amont of runs and finite time step size */
+		moldyn->tau=schedule->tau[sched];
+		moldyn->tau_square=moldyn->tau*moldyn->tau;
+		moldyn->timesteps=schedule->runs[sched];
+
+	/* integration according to schedule */
+
 	for(i=0;i<moldyn->time_steps;i++) {
 
 		/* integration step */
@@ -635,6 +651,10 @@ int moldyn_integrate(t_moldyn *moldyn) {
 		}
 	}
 
+		/* check for hooks */
+		if(schedule->hook)
+			schedule->hook(moldyn,schedule->hook_params);
+
 	return 0;
 }
 
@@ -694,14 +714,6 @@ printf("done\n");
 
 /* generic potential and force calculation */
 
-#define		CREATE_CELL_LIST(nb_list) \
-	link_cell_neighbour_index(moldyn,\
-	                          (atom[i].r.x+moldyn->dim.x/2)/lc->x,\
-	                          (atom[i].r.y+moldyn->dim.y/2)/lc->y,\
-	                          (atom[i].r.z+moldyn->dim.z/2)/lc->z,\
-	                          nb_list);
-
-
 int potential_force_calc(t_moldyn *moldyn) {
 
 	int i,count;
@@ -710,13 +722,15 @@ int potential_force_calc(t_moldyn *moldyn) {
 	t_list neighbour[27];
 	t_list *this;
 	double u;
+	u8 bc,bc3;
+	int countn,dnlc;
 
 	count=moldyn->count;
 	atom=moldyn->atom;
 	lc=&(moldyn->lc);
 
 	/* reset energy */
-	u=0.0;
+	moldyn->energy=0.0;
 
 	for(i=0;i<count;i++) {
 	
@@ -724,667 +738,465 @@ int potential_force_calc(t_moldyn *moldyn) {
 		v3_zero(&(atom[i].f));
 
 		/* single particle potential/force */
-		if(moldyn->status&MOLDYN_STAT_1BP)
+		if(atom[i].attr&ATOM_ATTR_1BP)
 			moldyn->pf_func1b(moldyn,&(atom[i]));
 
 		/* 2 body pair potential/force */
-		if(moldyn->status&MOLDYN_STAT_2BP) {
+		if(atom[i].attr&(ATOM_ATTR_2BP|ATOM_ATTR_3BP)) {
 		
-			CREATE_CELL_LIST(neighbour);
-
-			/*
-			 * processing cell of atom i
-			 * => no need to check for empty list
-			 *    (1 element at minimum)
-			 */
-
-			this=&(neighbour[0]);
-			list_reset(this);
-			do {
-				btom=this->current->data;
-				if(btom!=&(atom[i]))
-					moldyn->pf_func2b(moldyn,
-					                  &(atom[i]),btom);
-			} while(list_next(this)!=L_NO_NEXT_ELEMENT);
-
-			/*
-			 * direct neighbour cells
-			 * => no boundary condition check necessary
-			 */
-			for(j=0;j<lc->dnlc;j++) {
-				this=&(neighbour[j]);
-				list_reset(this);
-				if(this->start!=NULL) {
-					do {
-						btom=this->current->data;
-						moldyn->pf_func2b(moldyn,
-						                  &(atom[i]),
-						                  btom);
-					} while(list_next(this)!=\
-					        L_NO_NEXT_ELEMENT);
-			}
+			link_cell_neighbour_index(moldyn,
+				(atom[i].r.x+moldyn->dim.x/2)/lc->x,
+				(atom[i].r.y+moldyn->dim.y/2)/lc->y,
+				(atom[i].r.z+moldyn->dim.z/2)/lc->z,
+				neighbour);
+
+			countn=lc->countn;
+			dnlc=lc->dnlc;
+
+			for(j=0;j<countn;j++) {
 
-			/*
-			 * neighbour cells due to periodic bc
-			 * => check boundary conditions
-			 */
-			for(j=lc->dnlc;j<lc->countn;j++) {
 				this=&(neighbour[j]);
 				list_reset(this);
-				if(this->start!=NULL) {
-					do {
-						btom=this->current->data;
+
+				if(this->start==NULL)
+					continue;
+
+				bc=(j<dnlc)?0:1;
+
+				do {
+					btom=this->current->data;
+
+					if(btom==&(atom[i]))
+						continue;
+
+					if((btom->attr&ATOM_ATTR_2BP)&
+					   (atom[i].attr&ATOM_ATTR_2BP))
 						moldyn->pf_func2b(moldyn,
 						                  &(atom[i]),
-						                  btom);
+						                  btom,
+						                  bc);
 
-			}
+					/* 3 body potential/force */
+
+					if(!(atom[i].attr&ATOM_ATTR_3BP)||
+					   !(btom->attr&ATOM_ATTR_3BP))
+						continue;
+
+					link_cell_neighbour_index(moldyn,
+					   (btom->r.x+moldyn->dim.x/2)/lc->x,
+					   (btom->r.y+moldyn->dim.y/2)/lc->y,
+					   (btom->r.z+moldyn->dim.z/2)/lc->z,
+					   neighbourk);
+
+					for(k=0;k<lc->countn;k++) {
+
+						thisk=&(neighbourk[k]);
+						list_reset(thisk);
+					
+						if(thisk->start==NULL)
+							continue;
+
+						bck=(k<lc->dnlc)?0:1;
+
+						do {
+
+			ktom=thisk->current->data;
 
+			if(!(ktom->attr&ATOM_ATTR_3BP))
+				continue;
+
+			if(ktom==btom)
+				continue;
+
+			if(ktom==&(atom[i]))
+				continue;
+
+			moldyn->pf_func3b(moldyn,&(atom[i]),btom,ktom,bck);
+
+						} while(list_next(thisk)!=\
+						        L_NO_NEXT_ELEMENT);
+					
+				} while(list_next(this)!=L_NO_NEXT_ELEMENT);
+			}
 		}
+	}
+
+	return 0;
+}
+
+/*
+ * periodic boundayr checking
+ */
+
+int check_per_bound(t_moldyn *moldyn,t_3dvec *a) {
+	
+	double x,y,z;
+
+	x=0.5*dim->x;
+	y=0.5*dim->y;
+	z=0.5*dim->z;
+
+	if(moldyn->MOLDYN_ATTR_PBX)
+		if(a->x>=x) a->x-=dim->x;
+		else if(-a->x>x) a->x+=dim->x;
+	if(moldyn->MOLDYN_ATTR_PBY)
+		if(a->y>=y) a->y-=dim->y;
+		else if(-a->y>y) a->y+=dim->y;
+	if(moldyn->MOLDYN_ATTR_PBZ)
+		if(a->z>=z) a->z-=dim->z;
+		else if(-a->z>z) a->z+=dim->z;
 
 	return 0;
 }
+        
 
+/*
+ * example potentials
+ */
 
 /* harmonic oscillator potential and force */
 
-int harmonic_oscillator(t_moldyn *moldyn) {
+int harmonic_oscillator(t_moldyn *moldyn,t_atom *ai,t_atom *aj,u8 bc)) {
 
 	t_ho_params *params;
-	t_atom *atom,*btom;
-	t_linkcell *lc;
-	t_list *this,neighbour[27];
-	int i,j,c;
-	int count;
 	t_3dvec force,distance;
-	double d,u;
+	double d;
 	double sc,equi_dist;
-	int ni,nj,nk;
 
-	params=moldyn->pot_params;
-	atom=moldyn->atom;
-	lc=&(moldyn->lc);
+	params=moldyn->pot2b_params;
 	sc=params->spring_constant;
 	equi_dist=params->equilibrium_distance;
-	count=moldyn->count;
-
-	/* reset energy counter */
-	u=0.0;
 
-	for(i=0;i<count;i++) {
-		/* reset force */
-		v3_zero(&(atom[i].f));
-
-		/* determine cell + neighbours */
-		ni=(atom[i].r.x+(moldyn->dim.x/2))/lc->x;
-		nj=(atom[i].r.y+(moldyn->dim.y/2))/lc->y;
-		nk=(atom[i].r.z+(moldyn->dim.z/2))/lc->z;
-		c=link_cell_neighbour_index(moldyn,ni,nj,nk,neighbour);
-
-		/*
-		 * processing cell of atom i
-		 * => no need to check for empty list (1 element at minimum)
-		 */
-		this=&(neighbour[0]);
-		list_reset(this);
-		do {
-			btom=this->current->data;
-			if(btom==&(atom[i]))
-				continue;
-			v3_sub(&distance,&(atom[i].r),&(btom->r));
-			d=v3_norm(&distance);
-			if(d<=moldyn->cutoff) {
-				u+=(0.5*sc*(d-equi_dist)*(d-equi_dist));
-				v3_scale(&force,&distance,
-				         -sc*(1.0-(equi_dist/d)));
-				v3_add(&(atom[i].f),&(atom[i].f),&force);
-			}
-		} while(list_next(this)!=L_NO_NEXT_ELEMENT);
-
-		/*
-		 * direct neighbour cells
-		 * => no boundary condition check necessary
-		 */
-		for(j=1;j<c;j++) {
-			this=&(neighbour[j]);
-			list_reset(this); /* there might not be a single atom */
-			if(this->start!=NULL) {
-
-			do {
-				btom=this->current->data;
-				v3_sub(&distance,&(atom[i].r),&(btom->r));
-				d=v3_norm(&distance);
-				if(d<=moldyn->cutoff) {
-					u+=(0.5*sc*(d-equi_dist)*(d-equi_dist));
-					v3_scale(&force,&distance,
-					         -sc*(1.0-(equi_dist/d)));
-					v3_add(&(atom[i].f),&(atom[i].f),
-					       &force);
-				}
-			} while(list_next(this)!=L_NO_NEXT_ELEMENT);
-
-			}
-		}
-
-		/*
-		 * indirect neighbour cells
-		 * => check boundary conditions
-		 */
-		for(j=c;j<27;j++) {
-			this=&(neighbour[j]);
-			list_reset(this); /* check boundary conditions */
-			if(this->start!=NULL) {
-
-			do {
-				btom=this->current->data;
-				v3_sub(&distance,&(atom[i].r),&(btom->r));
-				v3_per_bound(&distance,&(moldyn->dim));
-				d=v3_norm(&distance);
-				if(d<=moldyn->cutoff) {
-					u+=(0.5*sc*(d-equi_dist)*(d-equi_dist));
-					v3_scale(&force,&distance,
-					         -sc*(1.0-(equi_dist/d)));
-					v3_add(&(atom[i].f),&(atom[i].f),
-					       &force);
-				}
-			} while(list_next(this)!=L_NO_NEXT_ELEMENT);
-
-			}
-		}
+	v3_sub(&distance,&(ai->r),&(aj->r);
+	
+	v3_per_bound(&distance,&(moldyn->dim));
+	if(bc) check_per_bound(moldyn,&distance);
+	d=v3_norm(&distance);
+	if(d<=moldyn->cutoff) {
+		/* energy is 1/2 (d-d0)^2, but we will add this twice ... */
+		moldyn->energy+=(0.25*sc*(d-equi_dist)*(d-equi_dist));
+		v3_scale(&force,&distance,-sc*(1.0-(equi_dist/d)));
+		v3_add(&(ai->f),&(ai->f),&force);
 	}
 
-	moldyn->energy=0.5*u;
-
 	return 0;
 }
 
 /* lennard jones potential & force for one sort of atoms */
  
-int lennard_jones(t_moldyn *moldyn) {
+int lennard_jones(t_moldyn *moldyn,t_atom *ai,t_atom *aj,u8 bc) {
 
 	t_lj_params *params;
-	t_atom *atom,*btom;
-	t_linkcell *lc;
-	t_list *this,neighbour[27];
-	int i,j,c;
-	int count;
 	t_3dvec force,distance;
 	double d,h1,h2,u;
 	double eps,sig6,sig12;
-	int ni,nj,nk;
 
 	params=moldyn->pot_params;
-	atom=moldyn->atom;
-	lc=&(moldyn->lc);
-	count=moldyn->count;
 	eps=params->epsilon4;
 	sig6=params->sigma6;
 	sig12=params->sigma12;
 
-	/* reset energy counter */
-	u=0.0;
-
-	for(i=0;i<count;i++) {
-		/* reset force */
-		v3_zero(&(atom[i].f));
-
-		/* determine cell + neighbours */
-		ni=(atom[i].r.x+(moldyn->dim.x/2))/lc->x;
-		nj=(atom[i].r.y+(moldyn->dim.y/2))/lc->y;
-		nk=(atom[i].r.z+(moldyn->dim.z/2))/lc->z;
-		c=link_cell_neighbour_index(moldyn,ni,nj,nk,neighbour);
-
-		/* processing cell of atom i */
-		this=&(neighbour[0]);
-		list_reset(this); /* list has 1 element at minimum */
-		do {
-			btom=this->current->data;
-			if(btom==&(atom[i]))
-				continue;
-			v3_sub(&distance,&(atom[i].r),&(btom->r));
-			d=v3_absolute_square(&distance);	/* 1/r^2 */
-			if(d<=moldyn->cutoff_square) {
-				d=1.0/d;	/* 1/r^2 */
-				h2=d*d; 	/* 1/r^4 */
-				h2*=d;	 	/* 1/r^6 */
-				h1=h2*h2; 	/* 1/r^12 */
-				u+=eps*(sig12*h1-sig6*h2);
-				h2*=d;		/* 1/r^8 */
-				h1*=d;		/* 1/r^14 */
-				h2*=6*sig6;
-				h1*=12*sig12;
-				d=+h1-h2;
-				d*=eps;
-				v3_scale(&force,&distance,d);
-				v3_add(&(atom[i].f),&(atom[i].f),&force);
-			}
-		} while(list_next(this)!=L_NO_NEXT_ELEMENT);
-
-		/* neighbours not doing boundary condition overflow */
-		for(j=1;j<c;j++) {
-			this=&(neighbour[j]);
-			list_reset(this); /* there might not be a single atom */
-			if(this->start!=NULL) {
-
-			do {
-				btom=this->current->data;
-				v3_sub(&distance,&(atom[i].r),&(btom->r));
-				d=v3_absolute_square(&distance); /* r^2 */
-				if(d<=moldyn->cutoff_square) {
-					d=1.0/d;	/* 1/r^2 */
-					h2=d*d; 	/* 1/r^4 */
-					h2*=d;	 	/* 1/r^6 */
-					h1=h2*h2; 	/* 1/r^12 */
-					u+=eps*(sig12*h1-sig6*h2);
-					h2*=d;		/* 1/r^8 */
-					h1*=d;		/* 1/r^14 */
-					h2*=6*sig6;
-					h1*=12*sig12;
-					d=+h1-h2;
-					d*=eps;
-					v3_scale(&force,&distance,d);
-					v3_add(&(atom[i].f),&(atom[i].f),
-					       &force);
-				}
-			} while(list_next(this)!=L_NO_NEXT_ELEMENT);
-				
-			}
-		}
-
-		/* neighbours due to boundary conditions */
-		for(j=c;j<27;j++) {
-			this=&(neighbour[j]);
-			list_reset(this); /* check boundary conditions */
-			if(this->start!=NULL) {
-
-			do {
-				btom=this->current->data;
-				v3_sub(&distance,&(atom[i].r),&(btom->r));
-				v3_per_bound(&distance,&(moldyn->dim));
-				d=v3_absolute_square(&distance); /* r^2 */
-				if(d<=moldyn->cutoff_square) {
-					d=1.0/d;	/* 1/r^2 */
-					h2=d*d; 	/* 1/r^4 */
-					h2*=d; 		/* 1/r^6 */
-					h1=h2*h2; 	/* 1/r^12 */
-					u+=eps*(sig12*h1-sig6*h2);
-					h2*=d;		/* 1/r^8 */
-					h1*=d;		/* 1/r^14 */
-					h2*=6*sig6;
-					h1*=12*sig12;
-					d=+h1-h2;
-					d*=eps;
-					v3_scale(&force,&distance,d);
-					v3_add(&(atom[i].f),&(atom[i].f),
-					       &force);
-				}
-			} while(list_next(this)!=L_NO_NEXT_ELEMENT);
-
-			}
-		}
+	v3_sub(&distance,&(ai->r),&(aj->r));
+	if(bc) check_per_bound(moldyn,&distance);
+	d=v3_absolute_square(&distance);	/* 1/r^2 */
+	if(d<=moldyn->cutoff_square) {
+		d=1.0/d;			/* 1/r^2 */
+		h2=d*d; 			/* 1/r^4 */
+		h2*=d;	 			/* 1/r^6 */
+		h1=h2*h2; 			/* 1/r^12 */
+		/* energy is eps*..., but we will add this twice ... */
+		moldyn->energy+=0.5*eps*(sig12*h1-sig6*h2);
+		h2*=d;				/* 1/r^8 */
+		h1*=d;				/* 1/r^14 */
+		h2*=6*sig6;
+		h1*=12*sig12;
+		d=+h1-h2;
+		d*=eps;
+		v3_scale(&force,&distance,d);
+		v3_add(&(ai->f),&(aj->f),&force);
 	}
 
-	moldyn->energy=0.5*u;
-	
 	return 0;
 }
 
-/* tersoff potential & force for 2 sorts of atoms */
-
-int tersoff(t_moldyn *moldyn) {
+/*
+ * tersoff potential & force for 2 sorts of atoms
+ */
 
-	t_tersoff_params *params;
-	t_atom *atom,*btom,*ktom;
-	t_linkcell *lc;
-	t_list *this,*thisk,neighbour[27],neighbourk[27];
-	int i,j,k,c,ck;
-	int count;
-	double u;
-	int ni,nj,nk;
-	int ki,kj,kk;
-	
+/* tersoff 1 body part */
+int tersoff_mult_1bp(t_moldyn *moldyn,t_atom *ai) {
 
-	params=moldyn->pot_params;
-	atom=moldyn->atom;
-	lc=&(moldyn->lc);
-	count=moldyn->count;
+	int num;
+	t_tersoff_mult_params *params;
+	t_tersoff_exchange *exchange;
 	
-	/* reset energy counter */
-	u=0.0;
-
-	for(i=0;i<count;i++) {
-		/* reset force */
-		v3_zero(&(atom[i].f));
-
-		/* determin cell neighbours */
-		ni=(atom[i].r.x+(moldyn->dim.x/2))/lc->x;
-		nj=(atom[i].r.y+(moldyn->dim.y/2))/lc->y;
-		nk=(atom[i].r.z+(moldyn->dim.z/2))/lc->z;
-		c=link_cell_neighbour_index(moldyn,ni,nj,nk,neighbour);
-
-		/*
-		 * processing cell of atom i
-		 * => no need to check for empty list (1 element at minimum)
-		 */
-		this=&(neighbour[0]);
-		list_reset(this);
-		do {
-			btom=this->current->data;
-			if(btom==&(atom[i]))
-				continue;
-
-			/* 2 body stuff */
-
-			/* we need: f_c, df_c, f_r, df_r */
-
-			v3_sub(&dist_ij,btom,&(atom[i]));
-			d_ij=v3_norm(&dist_ij);
-			if(d_ij<=S) {
-
-				/* determine the tersoff parameters */
-				if(atom[i].element!=btom->element) {
-				S=sqrt(TERSOFF_S[e1]*TERSOFF_S[e2]);
-				R=R_m;
-				A=;
-				lambda=;
-				B=;
-				mu=;
-				chi=;
-				beta=;
-				betaN=;
-
-				if(d_ij<=R) {
-					df_r=-lambda*A*exp(-lambda*d_ij)/d_ij;
-					v3_scale(&force,&dist_ij,df_r);
-					v3_add(&(atom[i].f),&(atom[i].f),
-						&force);
-				}
-				else {
-					s_r=S-R;
-					arg1=PI*(d_ij-R)/s_r;
-					f_c=0.5+0.5*cos(arg1);
-					df_c=-0.5*sin(arg1)*(PI/(s_r*d_ij));
-					f_r=A*exp(-lambda*d_ij);
-					df_r=-lambda*f_r/d_ij;
-					scale=df_c*f_r+df_r*f_c;
-					v3_scale(&force,&dist_ij,scale);
-					v3_add(&(atom[i].f),&(atom[i].f),
-					       &force);
-				}
-			}
-			else 
-				continue;		
-
-			
-			/* end 2 body stuff */ 
-
-			/* determine cell neighbours of btom */
-			ki=(btom->r.x+(moldyn->dim.x/2))/lc->x;
-			kj=(btom->r.y+(moldyn->dim.y/2))/lc->y;
-			kk=(btom->r.z+(moldyn->dim.z/2))/lc->z;
-			ck=link_cell_neighbour_index(moldyn,ki,kj,kk,
-			                             neighbourk);
-
-			/* go for zeta - 3 body stuff! */
-			zeta=0.0;
-			d_ij2=d_ij*d_ij;
-
-			/* cell of btom */
-			thisk=&(neighbourk[0]);
-			list_reset(thisk);
-			do {
-				ktom=thisk->current->data;
-				if(ktom==btom)
-					continue;
-				if(ktom==&(atom[i]))
-					continue;
-				
-				/* 3 body stuff (1) */
-				
-				v3_sub(&dist_ik,ktom,&(atom[i]));
-				d_ik=v3_norm(&dist_ik);
-				if(d_ik<=Sik) {
-
-				Rik=;
-				Sik=;
-				Aik=;
-				lambda_ik=;
-				Bik=;
-				mu_ik=;
-				omega_ik=;
-				c_i=;
-				d_i=;
-				h_i=;
-			
-
-					if(d_ik<=Rik) {
-						f_cik=1.0;
-						df_cik=0.0;
-					}
-					else {
-						sik_rik=Sik-Rik;
-						arg1ik=PI*(d_ik-Rik)/sik_rik;
-						f_cik=0.5+0.5*cos(arg1ik);
-						df_cik=-0.5*sin(arg1ik)* \
-						       (PI/(sik_rik*d_ik));
-						f_rik=Aik*exp(-lambda_ik*d_ik);
-						f_aik=-Bik*exp(-mu_ik*d_ik);
-					}
-			
-					v3_sub(&distance_jk,ktom,btom);
-					cos_theta=(d_ij2+d_ik*d_ik-d_jk*d_jk)/\
-					          (2*d_ij*d_ik);
-					sin_theta=sqrt(1.0/\
-					          (cos_theta*cos_theta));
-					theta=arccos(cos_theta);
-
-					
-				}
-				else
-					continue;
-
-				/* end 3 body stuff (1) */
-
-
-			} while(list_next(thisk)!=L_NO_NEXT_ELEMENT);
-
-			/* direct neighbours of btom cell */
-			for(k=1;k<ck;k++) {
-				thisk=&(neighbourk[k]);
-				list_reset(thisk);
-				if(thisk->start!=NULL) {
-
-				do {
-					ktom=thisk->current->data;
-					if(ktom==&(atom[i]))
-						continue;
-
-				/* 3 body stuff (2) */
-
-				} while(list_next(thisk)!=L_NO_NEXT_ELEMENT);
-
-				}
-			}
-
-			/* indirect neighbours of btom cell */
-			for(k=ck;k<27;k++) {
-				thisk=&(neighbourk[k]);
-				list_reset(thisk);
-				if(thisk->start!=NULL) {
-
-				do {
-					ktom=thisk->current->data;
-					if(ktom==&(atom[i]))
-						continue;
-
-				/* 3 body stuff */
-
-				} while(list_next(thisk)!=L_NO_NEXT_ELEMENT);
-
-				}
-			}
-
-
-		} while(list_next(this)!=L_NO_NEXT_ELEMENT);
-
-		/*
-		 * direct neighbour cells of atom i
-		 */
-		for(j=1;j<c;j++) {
-			this=&(neighbour[j]);
-			list_reset(this);
-			if(this->start!=NULL) {
-
-			do {
-				btom=this->current->data;
-
-				/* 2 body stuff */
-
+	num=ai->bnum;
+	params=moldyn->pot1b_params;
+	exchange=&(params->exchange);
 
-			/* determine cell neighbours of btom */
-			ki=(btom->r.x+(moldyn->dim.x/2))/lc->x;
-			kj=(btom->r.y+(moldyn->dim.y/2))/lc->y;
-			kk=(btom->r.z+(moldyn->dim.z/2))/lc->z;
-			ck=link_cell_neighbour_index(moldyn,ki,kj,kk,
-			                             neighbourk);
+	/*
+	 * simple: point constant parameters only depending on atom i to
+	 *         their right values
+	 */
 
-			/* cell of btom */
-			thisk=&(neighbourk[0]);
-			list_reset(thisk);
-			do {
-				ktom=thisk->current->data;
-				if(ktom==btom)
-					continue;
-				if(ktom==&(atom[i]))
-					continue;
-				
-				/* 3 body stuff (1) */
+	exchange->beta=&(params->beta[num]);
+	exchange->n=&(params->n[num]);
+	exchange->c=&(params->c[num]);
+	exchange->d=&(params->d[num]);
+	exchange->h=&(params->h[num]);
 
-			} while(list_next(thisk)!=L_NO_NEXT_ELEMENT);
+	exchange->betan=pow(*(exchange->beta),*(exchange->n));
+	exchange->c2=params->c[num]*params->c[num];
+	exchange->d2=params->d[num]*params->d[num];
+	exchange->c2d2=exchange->c2/exchange->d2;
 
-			/* direct neighbours of btom cell */
-			for(k=1;k<ck;k++) {
-				thisk=&(neighbourk[k]);
-				list_reset(thisk);
-				if(thisk->start!=NULL) {
+	return 0;
+}
+	
+/* tersoff 2 body part */
+int tersoff_mult_2bp(t_moldyn *moldyn,t_atom *ai,t_atom *aj,u8 bc) {
 
-				do {
-					ktom=thisk->current->data;
-					if(ktom==&(atom[i]))
-						continue;
+	t_tersoff_mult_params *params;
+	t_tersoff_exchange *exchange;
+	t_3dvec dist_ij;
+	double d_ij;
+	double A,B,R,S,lambda;
+	int num;
 
-				/* 3 body stuff (2) */
+	params=moldyn->pot_params;
+	num=ai->bnum;
+	exchange=&(params->exchange);
 
-				} while(list_next(thisk)!=L_NO_NEXT_ELEMENT);
+	exchange->run3bp=0;
+	
+	/*
+	 * we need: f_c, df_c, f_r, df_r
+	 *
+	 * therefore we need: R, S, A, lambda
+	 */
 
-				}
-			}
+	v3_sub(&dist_ij,&(ai->r),&(aj->r));
 
-			/* indirect neighbours of btom cell */
-			for(k=ck;k<27;k++) {
-				thisk=&(neighbourk[k]);
-				list_reset(thisk);
-				if(thisk->start!=NULL) {
+	if(bc) check_per_bound(moldyn,&dist_ij);
 
-				do {
-					ktom=thisk->current->data;
-					if(ktom==&(atom[i]))
-						continue;
+	/* save for use in 3bp */ /* REALLY ?!?!?! */
+	exchange->dist_ij=dist_ij;
 
-				/* 3 body stuff (3) */
+	/* constants */
+	if(num==aj->bnum) {
+		S=params->S[num];
+		R=params->R[num];
+		A=params->A[num];
+		lambda=params->lambda[num];
+		/* more constants depending of atoms i and j, needed in 3bp */
+		params->exchange.B=&(params->B[num]);
+		params->exchange.mu=params->mu[num];
+		params->exchange.chi=1.0;
+	}
+	else {
+		S=params->Smixed;
+		R=params->Rmixed;
+		A=params->Amixed;
+		lambda=params->lambda_m;
+		/* more constants depending of atoms i and j, needed in 3bp */
+		params->exchange.B=&(params->Bmixed);
+		params->exchange.mu=&(params->mu_m);
+		params->exchange.chi=params->chi;
+	}
 
-				} while(list_next(thisk)!=L_NO_NEXT_ELEMENT);
+	d_ij=v3_norm(&dist_ij);
 
-				}
-			}
+	/* save for use in 3bp */
+	exchange->d_ij=d_ij;
 
+	if(d_ij>S)
+		return 0;
 
-			} while(list_next(this)!=L_NO_NEXT_ELEMENT);
+	f_r=A*exp(-lamda*d_ij);
+	df_r=-lambda*f_r/d_ij;
 
-			}
-		}
+	/* f_a, df_a calc + save for 3bp use */
+	exchange->f_a=-B*exp(-mu*d_ij);
+	exchange->df_a=-mu*exchange->f_a/d_ij;
 
-		/*
-		 * indirect neighbour cells of atom i
-		 */
-		for(j=c;j<27;j++) {
-			this=&(neighbour[j]);
-			list_reset(this);
-			if(this->start!=NULL) {
-
-			do {
-				btom=this->current->data;
-
-				/* 2 body stuff */
-
-
-			/* determine cell neighbours of btom */
-			ki=(btom->r.x+(moldyn->dim.x/2))/lc->x;
-			kj=(btom->r.y+(moldyn->dim.y/2))/lc->y;
-			kk=(btom->r.z+(moldyn->dim.z/2))/lc->z;
-			ck=link_cell_neighbour_index(moldyn,ki,kj,kk,
-			                             neighbourk);
-
-			/* cell of btom */
-			thisk=&(neighbourk[0]);
-			list_reset(thisk);
-			do {
-				ktom=thisk->current->data;
-				if(ktom==btom)
-					continue;
-				if(ktom==&(atom[i]))
-					continue;
-				
-				/* 3 body stuff (1) */
+	if(d_ij<R) {
+		/* f_c = 1, df_c = 0 */
+		f_c=1.0;
+		df_c=0.0;
+		v3_scale(&force,&dist_ij,df_r);
+	}
+	else {
+		s_r=S-R;
+		arg=PI*(d_ij-R)/s_r;
+		f_c=0.5+0.5*cos(arg);
+		df_c=-0.5*sin(arg)*(PI/(s_r*d_ij));
+		scale=df_c*f_r+df_r*f_c;
+		v3_scale(&force,&dist_ij,scale);
+	}
 
-			} while(list_next(thisk)!=L_NO_NEXT_ELEMENT);
+	/* add forces */
+	v3_add(&(ai->f),&(ai->f),&force);
+	/* energy is 0.5 f_r f_c, but we will sum it up twice ... */
+	moldyn->energy+=(0.25*f_r*f_c);
 
-			/* direct neighbours of btom cell */
-			for(k=1;k<ck;k++) {
-				thisk=&(neighbourk[k]);
-				list_reset(thisk);
-				if(thisk->start!=NULL) {
+	/* save for use in 3bp */
+	exchange->f_c=f_c;
+	exchange->df_c=df_c;
 
-				do {
-					ktom=thisk->current->data;
-					if(ktom==&(atom[i]))
-						continue;
+	/* enable the run of 3bp function */
+	exchange->run3bp=1;
 
-				/* 3 body stuff (2) */
+	return 0;
+}
 
-				} while(list_next(thisk)!=L_NO_NEXT_ELEMENT);
+/* tersoff 3 body part */
 
-				}
-			}
+int tersoff_mult_3bp(t_moldyn *moldyn,t_atom *ai,t_atom *aj,t_atom *ak,u8 bc) {
 
-			/* indirect neighbours of btom cell */
-			for(k=ck;k<27;k++) {
-				thisk=&(neighbourk[k]);
-				list_reset(thisk);
-				if(thisk->start!=NULL) {
+	t_tersoff_mult_params *params;
+	t_tersoff_exchange *exchange;
+	t_3dvec dist_ij,dist_ik,dist_jk;
+	t_3dvec temp,force;
+	double R,S,s_r;
+	double d_ij,d_ik,d_jk;
+	double f_c,df_c,b_ij,f_a,df_a;
+	double n,c,d,h,neta,betan,betan_1;
+	double theta,cos_theta,sin_theta;
+	int num;
 
-				do {
-					ktom=thisk->current->data;
-					if(ktom==&(atom[i]))
-						continue;
+	params=moldyn->pot_params;
+	num=ai->bnum;
+	exchange=params->exchange;
 
-				/* 3 body stuff (3) */
+	if(!(exchange->run3bp))
+		return 0;
 
-				} while(list_next(thisk)!=L_NO_NEXT_ELEMENT);
+	/*
+	 * we need: f_c, d_fc, b_ij, db_ij, f_a, df_a
+	 *
+	 * we got f_c, df_c, f_a, df_a from 2bp calculation
+	 */
 
-				}
-			}
+	d_ij=exchange->d_ij;
+	d_ij2=exchange->d_ij2;
 
+	f_a=params->exchange.f_a;
+	df_a=params->exchange.df_a;
+	
+	/* d_ij is <= S, as we didn't return so far! */
 
-			} while(list_next(this)!=L_NO_NEXT_ELEMENT);
+	/*
+	 * calc of b_ij (scalar) and db_ij (vector)
+	 *
+	 * - for b_ij: chi, beta, f_c_ik, w(=1), c, d, h, n, cos_theta
+	 *
+	 * - for db_ij: d_theta, sin_theta, cos_theta, f_c_ik, df_c_ik,
+	 *              w_ik,
+	 *
+	 */
 
-			}
-		}
-		
+	
+	v3_sub(&dist_ik,&(aj->i),&(ak->r));
+	if(bc) check_per_bound(moldyn,&dist_ik);
+	d_ik=v3_norm(&dist_ik);
+
+	/* constants for f_c_ik calc */
+	if(num==ak->bnum) {
+		R=params->R[num];
+		S=params->S[num];
+	}
+	else {
+		R=params->Rmixed;
+		S=params->Smixed;
 	}
 
-	moldyn->energy=0.5*u;
+	/* calc of f_c_ik */
+	if(d_ik>S)
+		return 0;
 
+	if(d_ik<R) {
+		/* f_c_ik = 1, df_c_ik = 0 */
+		f_c_ik=1.0;
+		df_c_ik=0.0;
+	}
+	else {
+		s_r=S-R;
+		arg=PI*(d_ik-R)/s_r;
+		f_c_ik=0.5+0.5*cos(arg);
+		df_c_ik=-0.5*sin(arg)*(PI/(s_r*d_ik));
+	}
+	
+	v3_sub(&dist_jk,&(aj->r),&(ak->r));
+	if(bc) check_per_bound(moldyn,&dist_jk);
+	d_jk=v3_norm(&dist_jk);
+
+	beta=*(exchange->beta);
+	betan=exchange->betan;
+	n=*(exchange->n);
+	c=*(exchange->c);
+	d=*(exchange->d);
+	h=*(exchange->h);
+	c2=exchange->c2;
+	d2=exchange->d2;
+	c2d2=exchange->c2d2;
+
+	numer=d_ij2+d_ik*d_ik-d_jk*d_jk;
+	denom=2*d_ij*d_ik;
+	cos_theta=numer/denom;
+	sin_theta=sqrt(1.0-(cos_theta*cos_theta));
+	theta=arccos(cos_theta);
+	d_theta=(-1.0/sqrt(1.0-cos_theta*cos_theta))/(denom*denom);
+	d_theta1=2*denom-numer*2*d_ik/d_ij;
+	d_theta2=2*denom-numer*2*d_ij/d_ik;
+	d_theta1*=d_theta;
+	d_theta2*=d_theta;
+
+	h_cos=(h-cos_theta);
+	h_cos2=h_cos*h_cos;
+	d2_h_cos2=d2-h_cos2;
+
+	/* some usefull expressions */
+	frac1=c2/(d2-h_cos2);
+	bracket1=1+c2d2-frac1;
+	bracket2=f_c_ik*bracket1;
+	bracket2_n_1=pow(bracket2,n-1.0);
+	bracket2_n=bracket2_n_1*bracket2;
+	bracket3=1+betan*bracket2_n;
+	bracket3_pow_1=pow(bracket3,(-1.0/(2.0*n))-1.0);
+	bracket3_pow=bracket3_pow_1*bracket3;
+
+	/* now go on with calc of b_ij and derivation of b_ij */
+	b_ij=chi*bracket3_pow;
+
+	/* derivation of theta */
+	v3_scale(&force,&dist_ij,d1_theta);
+	v3_scale(&temp,&dist_ik,d_theta2);
+	v3_add(&force,&force,&temp);
+
+	/* part 1 of derivation of b_ij */
+	v3_scale(&force,sin_theta*2*h_cos*f_c_ik*frac1);
+
+	/* part 2 of derivation of b_ij */
+	v3_scale(&temp,&dist_ik,df_c_ik*bracket1);
+
+	/* sum up and scale ... */
+	v3_add(&temp,&temp,&force);
+	scale=bracket2_n_1*n*betan*(1+betan*bracket3_pow_1)*chi*(1.0/(2.0*n));
+	v3_scale(&temp,&temp,scale);
+
+	/* now construct an energy and a force out of that */
+	v3_scale(&temp,&temp,f_a);
+	v3_scale(&force,&dist_ij,df_a*b_ij);
+	v3_add(&temp,&temp,&force);
+	v3_scale(&temp,&temp,f_c);
+	v3_scale(&force,&dist_ij,df_c*b_ij*f_a);
+	v3_add(&force,&force,&temp);
+
+	/* add forces */
+	v3_add(&(ai->f),&(ai->f),&force);
+	/* energy is 0.5 f_r f_c, but we will sum it up twice ... */
+	moldyn->energy+=(0.25*f_a*b_ij*f_c);
+				
 	return 0;
 }