X-Git-Url: https://hackdaworld.org/gitweb/?a=blobdiff_plain;f=nlsop.c;h=2d093069f1c2ee5c24b421e3746b01d18f8efd69;hb=126057c72d3dcf4cea9f5e46f36606289703bd17;hp=81f408de60d8ccde2bbcd974f77d2277abb5a3ae;hpb=eedf79d33f24f1163cdadea0eb27c8f0b75c1d92;p=physik%2Fnlsop.git

diff --git a/nlsop.c b/nlsop.c
index 81f408d..2d09306 100644
--- a/nlsop.c
+++ b/nlsop.c
@@ -34,6 +34,7 @@ int usage(void)
  puts("usage:");
  puts("-h \t\t help");
  puts("-n \t\t no user interaction");
+ puts("-Z \t\t cryst -> amorph c diffusion in z direction");
  printf("-a <value> \t slope of nuclear energy loss (default %f)\n",A_EL);
  printf("-b <value> \t nuclear energy loss offset (default %f)\n",B_EL);
  printf("-x <value> \t # x cells (default %d)\n",X);
@@ -54,17 +55,19 @@ int usage(void)
  /*
  printf("-C <value> \t initial c concentration (default %d)\n",CC);
  */
- printf("-D <value> \t diffusion rate from cryst to amorph cells (default %f)\n",D_R);
+ printf("-D <value> \t diffusion rate from cryst to amorph cells (default %f)\n",DR_AC);
+ printf("-c <value> \t diffusion rate in cryst cells (default %f)\n",DR_CC);
  printf("-W <value> \t write every <value> steps to save file (default %d)\n",RESAVE);
  puts("-C <file> \t convert file to gnuplot format");
  puts("-L <file> \t load from file");
  puts("-S <file> \t save to file");
  puts("-R <file> \t read from random file");
+ puts("-P <file> \t specify implantatin profile file");
  
  return 1;
 }
 
-int process_cell(d3_lattice *d3_l,u32 x,u32 y,u32 z,int r,double a,double b,int *t_c)
+int process_cell(d3_lattice *d3_l,u32 x,u32 y,u32 z,info *my_info)
 {
  unsigned char *thiz;
  int *conc;
@@ -74,19 +77,20 @@ int process_cell(d3_lattice *d3_l,u32 x,u32 y,u32 z,int r,double a,double b,int
 
  thiz=d3_l->status+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
  conc=d3_l->extra+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
- p=b*URAND_MAX;
- for(i=-r;i<=r;i++)
+ p=my_info->b_ap*URAND_MAX;
+ for(i=-(my_info->range);i<=my_info->range;i++)
  {
-  for(j=-r;j<=r;j++)
+  for(j=-(my_info->range);j<=my_info->range;j++)
   {
    if(!(i==0 && j==0))
    {
     off=((x+d3_l->max_x+i)%d3_l->max_x)+((y+d3_l->max_y+j)%d3_l->max_x)*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
-    if(*(d3_l->status+off)&AMORPH) p+=a*(*(d3_l->extra+off))*URAND_MAX/(i*i+j*j);
+    if(*(d3_l->status+off)&AMORPH) p+=my_info->a_ap*(*(d3_l->extra+off))*URAND_MAX/(i*i+j*j);
    } 
   }
  }
- // printf("debug: p = %f\n",p);
+ p+=*conc*my_info->a_cp*URAND_MAX;
+ printf("debug: p = %f\n",p);
  if(!(*thiz&AMORPH))
  {
   if(get_rand(URAND_MAX)<=p) MAKE_AMORPH(thiz);
@@ -96,12 +100,12 @@ int process_cell(d3_lattice *d3_l,u32 x,u32 y,u32 z,int r,double a,double b,int
   if(get_rand(URAND_MAX)>p) MAKE_CRYST(thiz);
  }
  
- *t_c+=1;
+ my_info->cc+=1;
 
  return 1;
 }
 
-int distrib_c(d3_lattice *d3_l,double d_r,double a,double b)
+int distrib_c(d3_lattice *d3_l,info *my_info) /* double d_r,double a,double b,char z_diff) */
 {
  u32 x,y,z;
  int i,j,k,c;
@@ -191,6 +195,39 @@ int distrib_c(d3_lattice *d3_l,double d_r,double a,double b)
        }
       }
      }
+     for(c=-1;c<=1;c++)
+     {
+      if(c!=0)
+      {
+       off=((i+c+d3_l->max_x)%d3_l->max_x)+j*d3_l->max_x+k*d3_l->max_x*d3_l->max_y;
+       carry=0;
+       /* case neighbour not amorph */
+       if(!(*(d3_l->status+off)&AMORPH))
+       {
+	carry=(*(d3_l->extra+off)-*(d3_l->extra+offset))/2;
+	if(carry!=0)
+        {
+         *(d3_l->extra+offset)+=carry;
+	 *(d3_l->extra+off)-=carry;
+	}
+       }
+      }
+     }
+     /* cryst -> amorph diffusion in z direction */
+     if(z_diff)
+     {
+      for(c=1;c>=-1;c--)
+      {
+       off=i+j*d3_l->max_x+((k+c+d3_l->max_z)%d3_l->max_z)*d3_l->max_x*d3_l->max_y;
+       carry=0;
+       if(*(d3_l->status+off)&AMORPH) carry=(int)(d_r*(*(d3_l->extra+offset)));
+       if(carry!=0)
+       {
+        *(d3_l->extra+offset)-=carry;
+	*(d3_l->extra+off)+=carry;
+       }
+      }
+     } /* if z_diff */
     }
    } /* for z */
   } /* for y */
@@ -199,64 +236,34 @@ int distrib_c(d3_lattice *d3_l,double d_r,double a,double b)
  return 1;
 }
 
-int distrib_c_old(d3_lattice *d3_l,int t_c,double a,double b)
+int calc_pressure(d3_lattice *d3_l,int range)
 {
- int i,j,k,total,area;
- double sum;
- int temp,left;
- int *area_h;
- u32 x,y,z;
-
- area=d3_l->max_x*d3_l->max_y;
- area_h=(int *)malloc(d3_l->max_z*sizeof(int));
+ int i,j,off;
+ double count;
+ int x,y,z;
 
- total=0;
- sum=b*d3_l->max_z+a*d3_l->max_z*(d3_l->max_z+1)/2;
- for(i=0;i<d3_l->max_z;i++)
+ for(x=0;x<d3_l->max_x;x++)
  {
-  area_h[i]=0;
-  for(j=0;j<area;j++)
-  {
-   if(!(*(d3_l->status+(i*area)+j)&AMORPH))
-   {
-    area_h[i]+=1;
-   }
-  }
-  temp=(int)((i+1)*a+b)*t_c/(sum*area_h[i]);
-  for(j=0;j<area;j++)
-  {
-   if(!(*(d3_l->status+(i*area)+j)&AMORPH))
-   {
-    *(d3_l->extra+(i*area)+j)=temp;
-    total+=temp;
-   }
-  }
-  left=(int)(((i+1)*a+b)*t_c/sum)%area_h[i];
-  while(left)
+  for(y=0;y<d3_l->max_y;y++)
   {
-   x=get_rand(d3_l->max_x);
-   y=get_rand(d3_l->max_y);
-   if(!(*(d3_l->status+(i*area)+x+y*d3_l->max_x)&AMORPH))
+   for(z=0;z<d3_l->max_z;z++)
    {
-    *(d3_l->extra+(i*area)+x+y*d3_l->max_x)+=1;
-    total+=1;
-    left-=1;
+    count=0;
+    for(i=-range;i<=range;i++)
+    {
+     for(j=-range;j<=range;j++)
+     {
+      if(i!=0 && j!=0)
+      {
+       off=((x+d3_l->max_x+i)%d3_l->max_x)+((y+d3_l->max_y+j)%d3_l->max_x)*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
+       if(*(d3_l->status+off)&AMORPH) count+=((double)*(d3_l->extra+off))/(i*i+j*j);
+      }
+     }
+    }
+    *(unsigned char *)(d3_l->v_ptr+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y)=(unsigned char)(count*255/MAX_VPTR);
    }
   }
  }
- left=t_c-total;
- while(left)
- {
-  x=get_rand(d3_l->max_x);
-  y=get_rand(d3_l->max_y);
-  z=get_rand_lgp(d3_l->max_z,a,b);
-  if(!(*(d3_l->status+x+y*d3_l->max_x+z*area)&AMORPH))
-  {
-   *(d3_l->extra+x+y*d3_l->max_x+z*area)+=1;
-   left-=1;
-  }
- }
- free(area_h);
 
  return 1;
 }
@@ -369,18 +376,18 @@ int convert_file(char *cf,d3_lattice *d3_l)
 
 int main(int argc,char **argv)
 {
- u32 max_x,max_y,max_z,x,y,z,x_c,y_c,z_c;
- int i,quit,escape,nowait;
+ u32 x,y,z,x_c,y_c,z_c;
+ int i,quit,escape,switchmode,nowait;
  int refresh,resave;
  char s_file[MAX_CHARS];
  char s_file_tmp[MAX_CHARS];
  char l_file[MAX_CHARS];
  char c_file[MAX_CHARS];
+ char p_file[MAX_CHARS];
  char convert;
  char r_file[MAX_CHARS];
- char x_txt[MAX_TXT];
- char y_txt[MAX_TXT];
- char z_txt[MAX_TXT];
+#ifdef USE_DFB_API
+ char xyz_txt[MAX_TXT];
  char status_txt[MAX_TXT];
  char conc_txt[MAX_TXT];
  char steps_txt[MAX_TXT];
@@ -394,18 +401,23 @@ int main(int argc,char **argv)
  char ap2_txt[MAX_TXT];
  char cd2_txt[MAX_TXT];
  char el2_txt[MAX_TXT];
- char dr_txt[MAX_TXT];
+ char dr_ac_txt[MAX_TXT];
+ char dr_cc_txt[MAX_TXT];
+ char mode_txt[MAX_TXT];
  char *arg_v[MAX_ARGV];
+#endif
  d3_lattice d3_l;
  info my_info;
+ unsigned char mode;
 
- max_x=X;
- max_y=Y;
- max_z=Z;
+ d3_l.max_x=X;
+ d3_l.max_y=Y;
+ d3_l.max_z=Z;
  my_info.steps=STEPS;
  my_info.range=RANGE;
  refresh=REFRESH;
  resave=RESAVE;
+ my_info.z_diff=0;
  my_info.a_el=A_EL;
  my_info.b_el=B_EL;
  my_info.a_cd=A_CD;
@@ -413,15 +425,19 @@ int main(int argc,char **argv)
  my_info.a_ap=A_AP;
  my_info.b_ap=B_AP;
  my_info.cc=CC;
- my_info.d_r=D_R;
+ my_info.dr_ac=DR_AC;
+ my_info.dr_cc=DR_CC;
  nowait=0;
  quit=0;
  escape=0;
+ switchmode=0;
  strcpy(s_file,"");
  strcpy(l_file,"");
  strcpy(c_file,"");
+ strcpy(p_file,IMP_PROFILE);
  convert=0;
  strcpy(r_file,"");
+ mode=0;
 
  for(i=1;i<argc;i++)
  {
@@ -442,13 +458,13 @@ int main(int argc,char **argv)
      my_info.b_el=atof(argv[++i]);
      break;
     case 'x':
-     max_x=atoi(argv[++i]);
+     d3_l.max_x=atoi(argv[++i]);
      break;
     case 'y':
-     max_y=atoi(argv[++i]);
+     d3_l.max_y=atoi(argv[++i]);
      break;
     case 'z':
-     max_z=atoi(argv[++i]);
+     d3_l.max_z=atoi(argv[++i]);
      break;
     /*
     case 'X':
@@ -457,10 +473,11 @@ int main(int argc,char **argv)
     case 'Y':
      y=atoi(argv[++i]);
      break;
+    */
     case 'Z':
-     z=atoi(argv[++i]);
+     my_info.z_diff=1;
      break;
-    */
+    /* */
     case 's':
      my_info.steps=atoi(argv[++i]);
      break;
@@ -496,7 +513,10 @@ int main(int argc,char **argv)
      convert=1;
      break;
     case 'D':
-     my_info.d_r=atof(argv[++i]);
+     my_info.dr_ac=atof(argv[++i]);
+     break;
+    case 'c':
+     my_info.dr_cc=atof(argv[++i]);
      break;
     case 'L':
      strcpy(l_file,argv[++i]);
@@ -507,6 +527,9 @@ int main(int argc,char **argv)
     case 'R':
      strcpy(r_file,argv[++i]);
      break;
+    case 'P':
+     strcpy(p_file,argv[++i]);
+     break;
     default:
      usage();
      return -1;
@@ -514,19 +537,27 @@ int main(int argc,char **argv)
   } else usage();
  }
 
- x=max_x/2-1;
- y=max_y/2-1;
- z=max_z/2-1;
-
+ x=d3_l.max_x/2-1;
+ y=d3_l.max_y/2-1;
+ z=d3_l.max_z/2-1;
 
+#ifdef NODFB
+ if(!strcmp(s_file,""))
+ {
+  puts("NODFB defined, run with -S option");
+  return -1;
+ }
+#endif
 
  if(!strcmp(r_file,"")) rand_init(NULL);
  else rand_init(r_file);
 
  if(!strcmp(l_file,""))
  {
-  i=max_x*max_y*max_z;
-  d3_lattice_init(&argc,argv,&d3_l,max_x,max_y,max_z);
+  i=d3_l.max_x*d3_l.max_y*d3_l.max_z;
+#ifdef USE_DFB_API
+  d3_lattice_init(&argc,argv,&d3_l);
+#endif
   if((d3_l.status=(unsigned char *)malloc(i*sizeof(unsigned char)))==NULL)
   {
    puts("failed allocating status buffer");
@@ -549,11 +580,17 @@ int main(int argc,char **argv)
    convert_file(c_file,&d3_l);
    puts("done");
    return 1;
-  } else d3_lattice_init(&argc,argv,&d3_l,d3_l.max_x,d3_l.max_y,d3_l.max_z);
+  } 
+#ifdef USE_DFB_API
+    else d3_lattice_init(&argc,argv,&d3_l);
+#endif
  }
- 
+
+#ifdef USE_DFB_API
  d3_event_init(&d3_l);
+#endif
 
+#ifdef USE_DFB_API
  strcpy(a_txt,"args:");
  sprintf(s_txt,"steps: %d",my_info.steps);
  sprintf(r_txt,"pressure range: %d",my_info.range);
@@ -563,31 +600,34 @@ int main(int argc,char **argv)
  sprintf(el2_txt,"energy loss offset: %.2f",my_info.b_el);
  sprintf(cd_txt,"c distrib slope: %.2f",my_info.a_cd);
  sprintf(cd2_txt,"c distrib offset: %.2f",my_info.b_cd);
- sprintf(dr_txt,"diffusion rate: %.2f",my_info.d_r);
- arg_v[1]=x_txt;
- arg_v[2]=y_txt;
- arg_v[3]=z_txt;
- arg_v[4]=NULL;
- arg_v[5]=status_txt;
- arg_v[6]=conc_txt;
+ sprintf(dr_ac_txt,"a/c diffusion rate: %.2f",my_info.dr_ac);
+ sprintf(dr_cc_txt,"c/c diffusion rate: %.2f",my_info-dr_cc);
+ strcpy(mode_txt,"view: a/c mode");
+ arg_v[1]=xyz_txt;
+ arg_v[2]=NULL;
+ arg_v[3]=status_txt;
+ arg_v[4]=conc_txt;
+ arg_v[5]=NULL;
+ arg_v[6]=mode_txt;
  arg_v[7]=NULL;
- arg_v[8]=NULL;
- arg_v[9]=NULL;
- arg_v[10]=steps_txt;;
- arg_v[11]=cc_txt;
+ arg_v[8]=steps_txt;
+ arg_v[9]=cc_txt;
+ arg_v[10]=NULL;
+ arg_v[11]=NULL;
  arg_v[12]=NULL;
  arg_v[13]=NULL;
  arg_v[14]=a_txt;
- arg_v[15]=NULL;
- arg_v[16]=s_txt;
- arg_v[17]=r_txt;
- arg_v[18]=ap_txt;
- arg_v[19]=ap2_txt;
- arg_v[20]=el_txt;
- arg_v[21]=el2_txt;
- arg_v[22]=cd_txt;
- arg_v[23]=cd2_txt;
- arg_v[24]=dr_txt;
+ arg_v[15]=s_txt;
+ arg_v[16]=r_txt;
+ arg_v[17]=ap_txt;
+ arg_v[18]=ap2_txt;
+ arg_v[19]=el_txt;
+ arg_v[20]=el2_txt;
+ arg_v[21]=cd_txt;
+ arg_v[22]=cd2_txt;
+ arg_v[23]=dr_ac_txt;
+ arg_v[24]=dr_cc_txt;
+#endif
 
  if(!strcmp(l_file,""))
  {
@@ -597,33 +637,54 @@ int main(int argc,char **argv)
    x_c=get_rand(d3_l.max_x);
    y_c=get_rand(d3_l.max_y);
    z_c=get_rand_lgp(d3_l.max_z,my_info.a_el,my_info.b_el);
-   distrib_c(&d3_l,my_info.d_r,my_info.a_cd,my_info.b_cd);
-   process_cell(&d3_l,x_c,y_c,z_c,my_info.range,my_info.a_ap,my_info.b_ap,&(my_info.cc));
+   distrib_c(&d3_l,my_info.d_r,my_info.a_cd,my_info.b_cd,z_diff);
+   process_cell(&d3_l,x_c,y_c,z_c,&my_info);
+#ifdef USE_DFB_API
    if(i%refresh==0)
    {
-    sprintf(x_txt,"x: %d",x+1);
-    sprintf(y_txt,"y: %d",y+1);
-    sprintf(z_txt,"z: %d",z+1);
+    sprintf(xyz_txt,"x: %d  y: %d  z: %d",x+1,y+1,z+1);
     sprintf(status_txt,"status: %c",(*(d3_l.status+x+y*d3_l.max_x+z*d3_l.max_x*d3_l.max_y)&AMORPH)?'a':'c');
     sprintf(conc_txt,"conc: %d",*(d3_l.extra+x+y*d3_l.max_x+z*d3_l.max_x*d3_l.max_y));
     sprintf(steps_txt,"step: %d",i);
     sprintf(cc_txt,"total c: %d",my_info.cc);
-    d3_lattice_draw(&d3_l,x,y,z,24,arg_v);
-    // scan_event(&d3_l,&x,&y,&z,&quit,&escape);
+    d3_lattice_draw(&d3_l,x,y,z,24,arg_v,mode);
    }
-   if(i%resave==0 && strcmp(s_file,"") && resave!=0)
+#endif
+   if(i%resave==0 && strcmp(s_file,"") && resave!=0 && i!=0)
    {
     sprintf(s_file_tmp,"%s_%d_of_%d",s_file,i,my_info.steps);
     save_to_file(s_file_tmp,&d3_l,&my_info);
+#ifdef NODFB
+    printf("saved %s\n",s_file_tmp);
+#endif
    }
    i++;
   }
  }
 
- if(strcmp(s_file,"")) save_to_file(s_file,&d3_l,&my_info);
+ if(strcmp(s_file,""))
+ {
+   printf("saved %s\n",s_file);
+   save_to_file(s_file,&d3_l,&my_info);
+ }
+
+#ifdef USE_DFB_API
+ /* allocating buffer for pressure values */
+ if((d3_l.v_ptr=malloc(d3_l.max_x*d3_l.max_y*d3_l.max_z*sizeof(unsigned char)))==NULL)
+ {
+  puts("cannot allocate buffer for pressure values");
+  return -1;
+ }
+ /* calc values */
+ calc_pressure(&d3_l,my_info.range);
 
  while((quit==0) && (escape==0) && (nowait==0))
  {
+  /* bahh! */
+  if(switchmode==0) mode=0;
+  if(switchmode==1) mode=1;
+  if(switchmode==2) mode=2;
+  /* end of bahh! */
   sprintf(x_txt,"x: %d",x+1);
   sprintf(y_txt,"y: %d",y+1);
   sprintf(z_txt,"z: %d",z+1);
@@ -631,11 +692,15 @@ int main(int argc,char **argv)
   sprintf(conc_txt,"conc: %d",*(d3_l.extra+x+y*d3_l.max_x+z*d3_l.max_x*d3_l.max_y));
   strcpy(steps_txt,"step: end!");
   sprintf(cc_txt,"total c: %d",my_info.cc);
-  d3_lattice_draw(&d3_l,x,y,z,24,arg_v);
-  scan_event(&d3_l,&x,&y,&z,&quit,&escape);
+  if(switchmode==0) strcpy(mode_txt,"view: a/c mode");
+  if(switchmode==1) strcpy(mode_txt,"view: c conc mode");
+  if(switchmode==2) strcpy(mode_txt,"view: a pressure mode");
+  d3_lattice_draw(&d3_l,x,y,z,24,arg_v,mode);
+  scan_event(&d3_l,&x,&y,&z,&quit,&escape,&switchmode);
  }
 
  d3_lattice_release(&d3_l);
+#endif
 
  return 1;
 }