From fb4fac6ca2177733e8994e23d66fdfc25ac77172 Mon Sep 17 00:00:00 2001
From: hackbard <hackbard@tx2.hackdaworld.org>
Date: Tue, 8 Nov 2011 00:06:06 +0100
Subject: [PATCH] ifinished 100 db and bc conf

---
 posic/talks/mpi_app.tex | 245 +++++++++++++++++-----------------------
 1 file changed, 104 insertions(+), 141 deletions(-)

diff --git a/posic/talks/mpi_app.tex b/posic/talks/mpi_app.tex
index e4cdd48..687e0ca 100644
--- a/posic/talks/mpi_app.tex
+++ b/posic/talks/mpi_app.tex
@@ -1175,20 +1175,16 @@ $E_{\text{b}}\rightarrow 0$: non-interacting, isolated defects\\
 
 \end{slide}
 
-% continue here
-\fi
-
 \begin{slide}
 
- \footnotesize
-
-\begin{minipage}{9.5cm}
+\footnotesize
 
 \headphd
- {\large\bf
-  Si self-interstitial point defects in silicon\\[0.1cm]
- }
+{\large\bf
+ Si self-interstitial point defects in silicon\\[0.1cm]
+}
 
+\begin{center}
 \begin{tabular}{l c c c c c}
 \hline
  $E_{\text{f}}$ [eV] & \hkl<1 1 0> DB & H & T & \hkl<1 0 0> DB & V \\
@@ -1196,24 +1192,40 @@ $E_{\text{b}}\rightarrow 0$: non-interacting, isolated defects\\
  \textsc{vasp} & \underline{3.39} & 3.42 & 3.77 & 4.41 & 3.63 \\
  Erhart/Albe & 4.39 & 4.48$^*$ & \underline{3.40} & 5.42 & 3.13 \\
 \hline
-\end{tabular}\\[0.3cm]
+\end{tabular}\\[0.4cm]
+\end{center}
 
-\begin{minipage}{4.7cm}
-\includegraphics[width=4.7cm]{e_kin_si_hex.ps}
+\begin{minipage}{3cm}
+\begin{center}
+\underline{Vacancy}\\
+\includegraphics[width=2.8cm]{si_pd_albe/vac.eps}
+\end{center}
 \end{minipage}
-\begin{minipage}{4.7cm}
+\begin{minipage}{3cm}
 \begin{center}
-{\tiny nearly T $\rightarrow$ T}\\
+\underline{\hkl<1 1 0> DB}\\
+\includegraphics[width=2.8cm]{si_pd_albe/110_bonds.eps}
+\end{center}
+\end{minipage}
+\begin{minipage}{3cm}
+\begin{center}
+\underline{\hkl<1 0 0> DB}\\
+\includegraphics[width=2.8cm]{si_pd_albe/100_bonds.eps}
+\end{center}
+\end{minipage}
+\begin{minipage}{3cm}
+\begin{center}
+\underline{Tetrahedral}\\
+\includegraphics[width=2.8cm]{si_pd_albe/tet_bonds.eps}
 \end{center}
-\includegraphics[width=4.7cm]{nhex_tet.ps}
-\end{minipage}\\[0.1cm]
+\end{minipage}\\
 
 \underline{Hexagonal} \hspace{2pt}
 \href{../video/si_self_int_hexa.avi}{$\rhd$}\\[0.1cm]
 \framebox{
 \begin{minipage}{2.7cm}
 $E_{\text{f}}^*=4.48\text{ eV}$\\
-\includegraphics[width=2.7cm]{si_pd_albe/hex_a.eps}
+\includegraphics[width=2.7cm]{si_pd_albe/hex_a_bonds.eps}
 \end{minipage}
 \begin{minipage}{0.4cm}
 \begin{center}
@@ -1222,29 +1234,14 @@ $\Rightarrow$
 \end{minipage}
 \begin{minipage}{2.7cm}
 $E_{\text{f}}=3.96\text{ eV}$\\
-\includegraphics[width=2.8cm]{si_pd_albe/hex.eps}
+\includegraphics[width=2.8cm]{si_pd_albe/hex_bonds.eps}
 \end{minipage}
 }
-\begin{minipage}{2.9cm}
-\begin{flushright}
-\underline{Vacancy}\\
-\includegraphics[width=3.0cm]{si_pd_albe/vac.eps}
-\end{flushright}
-\end{minipage}
-
-\end{minipage}
-\begin{minipage}{2.5cm}
-
-\begin{flushright}
-\vspace*{0.2cm}
-\underline{\hkl<1 1 0> dumbbell}\\
-\includegraphics[width=3.0cm]{si_pd_albe/110.eps}\\
-\underline{Tetrahedral}\\
-\includegraphics[width=3.0cm]{si_pd_albe/tet.eps}\\
-\underline{\hkl<1 0 0> dumbbell}\\
-\includegraphics[width=3.0cm]{si_pd_albe/100.eps}
-\end{flushright}
-
+\begin{minipage}{5.5cm}
+\begin{center}
+{\tiny nearly T $\rightarrow$ T}\\
+\end{center}
+\includegraphics[width=6.0cm]{nhex_tet.ps}
 \end{minipage}
 
 \end{slide}
@@ -1254,159 +1251,122 @@ $E_{\text{f}}=3.96\text{ eV}$\\
 \footnotesize
 
 \headphd
- {\large\bf
-  C interstitial point defects in silicon\\[-0.1cm]
- }
+{\large\bf
+ C interstitial point defects in silicon\\
+}
 
-{\scriptsize
 \begin{tabular}{l c c c c c c r}
 \hline
- $E_{\text{f}}$ & T & H & \hkl<1 0 0> DB & \hkl<1 1 0> DB & S & B & \cs{} \& \si\\
+ $E_{\text{f}}$ [eV] & T & H & \hkl<1 0 0> DB & \hkl<1 1 0> DB & S & B &
+ {\color{black} \cs{} \& \si}\\
 \hline
  \textsc{vasp} & unstable & unstable & \underline{3.72} & 4.16 & 1.95 & 4.66 & {\color{green}4.17}\\
- Erhart/Albe MD & 6.09 & 9.05$^*$ & \underline{3.88} & 5.18 & {\color{red}0.75} & 5.59$^*$ & {\color{green}4.43} \\
+ Erhart/Albe & 6.09 & 9.05$^*$ & \underline{3.88} & 5.18 & {\color{red}0.75} & 5.59$^*$ & {\color{green}4.43} \\
 \hline
-\end{tabular}
-}\\[0.1cm]
+\end{tabular}\\[0.1cm]
 
 \framebox{
-\begin{minipage}{2.7cm}
+\begin{minipage}{2.8cm}
 \underline{Hexagonal} \hspace{2pt}
 \href{../video/c_in_si_int_hexa.avi}{$\rhd$}\\
 $E_{\text{f}}^*=9.05\text{ eV}$\\
-\includegraphics[width=2.7cm]{c_pd_albe/hex.eps}
+\includegraphics[width=2.8cm]{c_pd_albe/hex_bonds.eps}
 \end{minipage}
 \begin{minipage}{0.4cm}
 \begin{center}
 $\Rightarrow$
 \end{center}
 \end{minipage}
-\begin{minipage}{2.7cm}
+\begin{minipage}{2.8cm}
 \underline{\hkl<1 0 0>}\\
 $E_{\text{f}}=3.88\text{ eV}$\\
-\includegraphics[width=2.7cm]{c_pd_albe/100.eps}
+\includegraphics[width=2.8cm]{c_pd_albe/100_bonds.eps}
 \end{minipage}
 }
-\begin{minipage}{2cm}
+\begin{minipage}{1.4cm}
 \hfill
 \end{minipage}
-\begin{minipage}{3cm}
+\begin{minipage}{3.0cm}
 \begin{flushright}
 \underline{Tetrahedral}\\
-\includegraphics[width=3.0cm]{c_pd_albe/tet.eps}
+\includegraphics[width=3.0cm]{c_pd_albe/tet_bonds.eps}
 \end{flushright}
 \end{minipage}
 
 \framebox{
-\begin{minipage}{2.7cm}
+\begin{minipage}{2.8cm}
 \underline{Bond-centered}\\
 $E_{\text{f}}^*=5.59\text{ eV}$\\
-\includegraphics[width=2.7cm]{c_pd_albe/bc.eps}
+\includegraphics[width=2.8cm]{c_pd_albe/bc_bonds.eps}
 \end{minipage}
 \begin{minipage}{0.4cm}
 \begin{center}
 $\Rightarrow$
 \end{center}
 \end{minipage}
-\begin{minipage}{2.7cm}
+\begin{minipage}{2.8cm}
 \underline{\hkl<1 1 0> dumbbell}\\
 $E_{\text{f}}=5.18\text{ eV}$\\
-\includegraphics[width=2.7cm]{c_pd_albe/110.eps}
+\includegraphics[width=2.8cm]{c_pd_albe/110_bonds.eps}
 \end{minipage}
 }
-\begin{minipage}{2cm}
+\begin{minipage}{1.4cm}
 \hfill
 \end{minipage}
-\begin{minipage}{3cm}
+\begin{minipage}{3.0cm}
 \begin{flushright}
 \underline{Substitutional}\\
-\includegraphics[width=3.0cm]{c_pd_albe/sub.eps}
+\includegraphics[width=3.0cm]{c_pd_albe/sub_bonds.eps}
 \end{flushright}
 \end{minipage}
 
 \end{slide}
 
-\end{document}
-\ifnum1=0
+% continue here
+\fi
 
 \begin{slide}
 
-\footnotesize
+\headphd
+{\large\bf\boldmath
+ C-Si dimer \& bond-centered interstitial configuration
+}
 
- {\large\bf\boldmath
-  C \hkl<1 0 0> dumbbell interstitial configuration\\
- }
+\footnotesize
 
-{\tiny
-\begin{tabular}{l c c c c c c c c}
-\hline
- Distances [nm] & $r(1C)$ & $r(2C)$ & $r(3C)$ & $r(12)$ & $r(13)$ & $r(34)$ & $r(23)$ & $r(25)$ \\
-\hline
-Erhart/Albe & 0.175 & 0.329 & 0.186 & 0.226 & 0.300 & 0.343 & 0.423 & 0.425 \\
-VASP & 0.174 & 0.341 & 0.182 & 0.229 & 0.286 & 0.347 & 0.422 & 0.417 \\
-\hline
-\end{tabular}\\[0.2cm]
-\begin{tabular}{l c c c c }
-\hline
- Angles [$^{\circ}$] & $\theta_1$ & $\theta_2$ & $\theta_3$ & $\theta_4$ \\
-\hline
-Erhart/Albe & 140.2 & 109.9 & 134.4 & 112.8 \\
-VASP & 130.7 & 114.4 & 146.0 & 107.0 \\
-\hline
-\end{tabular}\\[0.2cm]
-\begin{tabular}{l c c c}
-\hline
- Displacements [nm]& $a$ & $b$ & $|a|+|b|$ \\
-\hline
-Erhart/Albe & 0.084 & -0.091 & 0.175 \\
-VASP & 0.109 & -0.065 & 0.174 \\
-\hline
-\end{tabular}\\[0.6cm]
-}
+\vspace{0.1cm}
 
-\begin{minipage}{3.0cm}
+\begin{minipage}[t]{4.1cm}
+{\bf\boldmath C \hkl<1 0 0> DB interstitial}\\[0.1cm]
+\begin{minipage}{2.0cm}
 \begin{center}
 \underline{Erhart/Albe}
-\includegraphics[width=3.0cm]{c_pd_albe/100_cmp.eps}
+\includegraphics[width=2.0cm]{c_pd_albe/100_cmp.eps}
 \end{center}
 \end{minipage}
-\begin{minipage}{3.0cm}
+\begin{minipage}{2.0cm}
 \begin{center}
-\underline{VASP}
-\includegraphics[width=3.0cm]{c_pd_vasp/100_cmp.eps}
+\underline{\textsc{vasp}}
+\includegraphics[width=2.0cm]{c_pd_vasp/100_cmp.eps}
 \end{center}
-\end{minipage}\\
-
-\begin{picture}(0,0)(-185,10)
-\includegraphics[width=6.8cm]{100-c-si-db_cmp.eps}
-\end{picture}
-\begin{picture}(0,0)(-280,-150)
-\includegraphics[width=3.3cm]{c_pd_vasp/eden.eps}
-\end{picture}
-
-\begin{pspicture}(0,0)(0,0)
-\psellipse[linecolor=green](5.18,5.92)(0.5,0.3)
-\psellipse[linecolor=red](3.45,5.92)(1.0,0.4)
-\psellipse[linecolor=blue](2.7,6.92)(0.9,0.2)
-\psellipse[linecolor=blue](4.65,6.92)(0.9,0.2)
-\end{pspicture}
-
-\end{slide}
-
-\begin{slide}
-
-\small
-
-\begin{minipage}{8.5cm}
-
- {\large\bf
-  Bond-centered interstitial configuration\\[-0.1cm]
- }
-
-\begin{minipage}{3.0cm}
-\includegraphics[width=2.8cm]{c_pd_vasp/bc_2333.eps}\\
+\end{minipage}\\[0.2cm]
+Si-C-Si bond angle $\rightarrow$ \unit[180]{$^{\circ}$}\\
+$\Rightarrow$ $sp$ hybridization\\[0.1cm]
+Si-Si-Si bond angle $\rightarrow$ \unit[120]{$^{\circ}$}\\
+$\Rightarrow$ $sp^2$ hybridization
+\begin{center}
+\includegraphics[width=3.4cm]{c_pd_vasp/eden.eps}\\[-0.1cm]
+{\tiny Charge density isosurface}
+\end{center}
+\end{minipage}
+\begin{minipage}{0.2cm}
+\hfill
 \end{minipage}
-\begin{minipage}{5.2cm}
+\begin{minipage}[t]{8.1cm}
+\begin{flushright}
+{\bf Bond-centered interstitial}\\[0.1cm]
+\begin{minipage}{4.4cm}
+\scriptsize
 \begin{itemize}
  \item Linear Si-C-Si bond
  \item Si: one C \& 3 Si neighbours
@@ -1415,6 +1375,9 @@ VASP & 0.109 & -0.065 & 0.174 \\
        Real local minimum!
 \end{itemize}
 \end{minipage}
+\begin{minipage}{2.7cm}
+\includegraphics[width=2.8cm]{c_pd_vasp/bc_2333.eps}\\
+\end{minipage}
 
 \framebox{
  \tiny
@@ -1470,32 +1433,32 @@ VASP & 0.109 & -0.065 & 0.174 \\
   \end{flushright}
   \end{minipage}
  \end{minipage}
-}\\[0.1cm]
+}\\[0.4cm]
 
-\framebox{
-\begin{minipage}{4.5cm}
-\includegraphics[width=4cm]{c_100_mig_vasp/im_spin_diff.eps}
-\end{minipage}
-\begin{minipage}{3.5cm}
+%\framebox{
+\begin{minipage}{2.8cm}
+\scriptsize
+Charge density\\
 {\color{gray}$\bullet$} Spin up\\
 {\color{green}$\bullet$} Spin down\\
 {\color{blue}$\bullet$} Resulting spin up\\
 {\color{yellow}$\bullet$} Si atoms\\
 {\color{red}$\bullet$} C atom
 \end{minipage}
-}
-
+\begin{minipage}{3.6cm}
+\includegraphics[width=3.8cm]{c_100_mig_vasp/im_spin_diff.eps}
 \end{minipage}
-\begin{minipage}{4.2cm}
-\begin{flushright}
-\includegraphics[width=4.3cm]{c_pd_vasp/bc_2333_ksl.ps}\\
-{\color{green}$\Box$} {\tiny unoccupied}\\
-{\color{red}$\bullet$} {\tiny occupied}
+%}
+
 \end{flushright}
+
 \end{minipage}
 
 \end{slide}
 
+\end{document}
+\ifnum1=0
+
 \begin{slide}
 
  {\large\bf\boldmath
-- 
2.39.2