removed linear pprox of c distr and nel profile

diff --git a/nlsop.c b/nlsop.c
index 0cdecc4..7603876 100644 (file)
--- a/nlsop.c
+++ b/nlsop.c
@@ -55,8 +55,6 @@ int usage(void)
  puts("-n \t\t no user interaction");
  puts("-Z \t\t cryst -> amorph c diffusion in z direction");
  puts("-i \t\t no cryst to cryst diffusion");
- printf("-a <value> \t slope of nuclear energy loss (default %f)\n",A_EL);
- printf("-b <value> \t nuclear energy loss offset (default %f)\n",B_EL);
  printf("-x <value> \t # x cells (default %d)\n",X);
  printf("-y <value> \t # y cells (default %d)\n",Y);
  printf("-z <value> \t # z cells (default %d)\n",Z);
@@ -66,8 +64,6 @@ int usage(void)
  printf("-f <value> \t pressure = <value> * 1/distance^2 (default %f)\n",A_AP);
  printf("-p <value> \t pressure offset (default %f)\n",B_AP);
  printf("-F <value> \t proportionality constant between c conc and ability to get amorphous (default %f)\n",A_CP);
- printf("-A <value> \t slope of linear c distribution (default %f)\n",A_CD);
- printf("-B <value> \t linear c distribution offset (default %f)\n",B_CD);
  printf("-D <value> \t diffusion rate from cryst to amorph cells (default %f)\n",DR_AC);
  printf("-c <value> \t diffusion rate in cryst cells (default %f)\n",DR_CC);
  printf("-e <value> \t do diffusion every <value> steps (default %d)\n",DIFF_RATE);
@@ -85,7 +81,7 @@ int usage(void)
  return 1;
 }
 
-int process_cell(d3_lattice *d3_l,u32 x,u32 y,u32 z,info *my_info)
+int process_cell(d3_lattice *d3_l,u32 x,u32 y,u32 z,info *my_info,u32 nel_z)
 {
  unsigned char *thiz;
  int *conc;
@@ -95,7 +91,7 @@ int process_cell(d3_lattice *d3_l,u32 x,u32 y,u32 z,info *my_info)
 
  thiz=d3_l->status+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
  conc=d3_l->extra+x+y*d3_l->max_x+z*d3_l->max_x*d3_l->max_y;
- p=my_info->b_ap*URAND_MAX;
+ p=my_info->b_ap*URAND_MAX*nel_z;
  for(i=-(my_info->range);i<=my_info->range;i++)
  {
   for(j=-(my_info->range);j<=my_info->range;j++)
@@ -768,7 +764,7 @@ int get_c_ratio(double *c_ratio,char *pfile,info *my_info,d3_lattice *d3_l)
    a=atof(p)/10; /* nm */
    p=strtok(NULL," ");
    b=atof(p);
-   if(a>my_info->b_cd*CELL_LENGTH && a<(my_info->b_cd+d3_l->max_z)*CELL_LENGTH) d+=b;
+   if(a<=d3_l->max_z*CELL_LENGTH) d+=b;
    all+=b;
   }
  }
@@ -868,8 +864,6 @@ int main(int argc,char **argv)
  char a_txt[MAX_TXT];
  char s_txt[MAX_TXT];
  char ap_txt[MAX_TXT];
- char el_txt[MAX_TXT];
- char cd_txt[MAX_TXT];
  char r_txt[MAX_TXT];
  char cp_txt[MAX_TXT];
  char zdiff_txt[MAX_TXT];
@@ -892,6 +886,7 @@ int main(int argc,char **argv)
  u32 *c_profile;
  u32 *n_e_loss;
  u32 ne_max,ip_max;
+ u32 nel_z;
 
  d3_l.max_x=X;
  d3_l.max_y=Y;
@@ -902,10 +897,6 @@ int main(int argc,char **argv)
  resave=RESAVE;
  my_info.z_diff=0;
  my_info.c_diff=1;
- my_info.a_el=A_EL;
- my_info.b_el=B_EL;
- my_info.a_cd=A_CD;
- my_info.b_cd=B_CD;
  my_info.a_ap=A_AP;
  my_info.b_ap=B_AP;
  my_info.a_cp=A_CP;
@@ -943,12 +934,6 @@ int main(int argc,char **argv)
     case 'n':
      nowait=1;
      break;
-    case 'a':
-     my_info.a_el=atof(argv[++i]);
-     break;
-    case 'b':
-     my_info.b_el=atof(argv[++i]);
-     break;
     case 'x':
      d3_l.max_x=atoi(argv[++i]);
      break;
@@ -983,12 +968,6 @@ int main(int argc,char **argv)
     case 'F':
      my_info.a_cp=atof(argv[++i]);
      break;
-    case 'A':
-     my_info.a_cd=atof(argv[++i]);
-     break;
-    case 'B':
-     my_info.b_cd=atof(argv[++i]);
-     break;
     case 'W':
      resave=atoi(argv[++i]);
      break;
@@ -1097,8 +1076,6 @@ int main(int argc,char **argv)
  sprintf(dose_txt,"dose: %.2fe+17 C/cm²",my_info.steps*1.0/(d3_l.max_x*d3_l.max_y*CELL_LENGTH*CELL_LENGTH*1000));
  sprintf(r_txt,"pressure range: %d",my_info.range);
  sprintf(ap_txt,"a_ap: %f  b_ap: %f",my_info.a_ap,my_info.b_ap);
- sprintf(el_txt,"a_el: %f  b_el: %f",my_info.a_el,my_info.b_el);
- sprintf(cd_txt,"a_cd: %f  b_cd: %f",my_info.a_cd,my_info.b_cd);
  sprintf(cp_txt,"a_cp: %f",my_info.a_cp);
  sprintf(dr_ac_txt,"a/c diffusion rate: %f",my_info.dr_ac);
  if(my_info.c_diff!=0) sprintf(dr_cc_txt,"c/c diffusion rate: %f",my_info.dr_cc);
@@ -1123,13 +1100,13 @@ int main(int argc,char **argv)
  arg_v[13]=zdiff_txt;
  arg_v[14]=r_txt;
  arg_v[15]=ap_txt;
- arg_v[16]=el_txt;
- arg_v[17]=cd_txt;
- arg_v[18]=cp_txt;
- arg_v[19]=dr_ac_txt;
- arg_v[20]=dr_cc_txt;
- arg_v[21]=hpi_txt;
- arg_v[22]=csat_txt;
+ arg_v[16]=cp_txt;
+ arg_v[17]=dr_ac_txt;
+ arg_v[18]=dr_cc_txt;
+ arg_v[19]=hpi_txt;
+ arg_v[20]=csat_txt;
+ arg_v[21]=NULL;
+ arg_v[22]=NULL;
  arg_v[23]=NULL;
  arg_v[24]=NULL;
  arg_v[25]=NULL;
@@ -1179,8 +1156,10 @@ int main(int argc,char **argv)
    {
     x_c=get_rand(d3_l.max_x);
     y_c=get_rand(d3_l.max_y);
-    z_c=get_rand_reject(d3_l.max_z,ne_max,n_e_loss);
-    process_cell(&d3_l,x_c,y_c,z_c,&my_info);
+    // z_c=get_rand_reject(d3_l.max_z,ne_max,n_e_loss);
+    z_c=get_rand(d3_l.max_z);
+    nel_z=(URAND_MAX*n_e_loss[z_c])/ne_max;
+    process_cell(&d3_l,x_c,y_c,z_c,&my_info,nel_z);
    }
    distrib_c(&d3_l,&my_info,i,c_ratio,ip_max,c_profile);
 #ifdef USE_DFB_API

diff --git a/nlsop.h b/nlsop.h
index b309cc4..3231cb7 100644 (file)
--- a/nlsop.h
+++ b/nlsop.h
@@ -13,15 +13,12 @@ typedef unsigned int u32;
 typedef struct __info
 {
  int cc,steps,range,diff_rate,cpi,c_sat;
- double a_el,b_el,a_cd,b_cd,a_ap,b_ap,a_cp,dr_ac,dr_cc;
+ double a_ap,b_ap,a_cp,dr_ac,dr_cc;
  char z_diff,c_diff;
 } info;
 
 #define AMORPH 1
 
-#define A_EL 1.
-#define B_EL .0
-
 #define X 64
 #define Y 64
 #define Z 233
@@ -31,9 +28,6 @@ typedef struct __info
 #define REFRESH 100000
 #define RESAVE 10000000
 
-#define A_CD 1.
-#define B_CD .0
-
 #define CC 0
 
 #define DR_AC .5