if [ -z "$1" ]; then exit fi if [ ! -f ./config ]; then exit fi [ ! -d $1 ] && mkdir $1 ./clean $1 cp -v config $1/config # create run file rf=`basename $1` cat > run_$rf <<-EOF #!/bin/bash #$ -cwd ./mdrun -c ./config -s $1 EOF # submit job qsub -q all.q run_$rf