changes to visualization, not finished by now!

[physik/posic.git] / run

diff --git a/run b/run
index 2110d43..6e120d7 100755 (executable)
--- a/run
+++ b/run
@@ -1,10 +1,11 @@
-mkdir -p saves video
+[ ! -d $1 ] && mkdir $1
 ./clean $1
-./sic $1
+./sic $@
 if [ "$?" == "0" ]; then
        #./perms
        if [ "$1" ] ; then
-               rasmol -nodisplay < $1/visualize.scr > /dev/null 2>&1
+               ./visualize $1
+               #rasmol -32 -nodisplay < $1/visualize.scr > /dev/null 2>&1
                ./ppm2avi $1
        fi
 fi