also calc quality3

diff --git a/bond_analyze_script b/bond_analyze_script
index e06c7ec..7ae0bb5 100755 (executable)
--- a/bond_analyze_script
+++ b/bond_analyze_script
@@ -12,9 +12,10 @@ rm -f $1/bond_analyze.txt
 for i in $1/*.save; do
        bai="`./bond_analyze $i | grep '\[bond' | grep quality`"
        time=`echo $bai | awk '{ print $4 }'`
-       quality=`echo $bai | awk '{ print $8 }'`
+       quality4=`echo $bai | awk '{ print $8 }'`
+       quality3=`echo $bai | awk '{ print $10 }'`
        count=`echo $bai | awk '{ print $12 }'`
-       echo "$time $quality $count" >> $1/bond_analyze.txt
+       echo "$time $quality4 $quality3 $count" >> $1/bond_analyze.txt
 done
 
 echo "done"